View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11224_low_3 (Length: 497)

Name: NF11224_low_3
Description: NF11224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11224_low_3
NF11224_low_3
[»] chr6 (7 HSPs)
chr6 (13-454)||(7793532-7793973)
chr6 (330-465)||(7895886-7896017)
chr6 (365-475)||(7868117-7868226)
chr6 (281-322)||(7805488-7805529)
chr6 (365-402)||(14435310-14435347)
chr6 (366-406)||(7815753-7815793)
chr6 (415-473)||(7818651-7818709)
[»] chr3 (1 HSPs)
chr3 (365-463)||(43693234-43693332)
[»] scaffold0989 (1 HSPs)
scaffold0989 (365-402)||(120-157)
[»] chr5 (2 HSPs)
chr5 (301-386)||(32429101-32429186)
chr5 (364-400)||(24004671-24004707)
[»] chr4 (1 HSPs)
chr4 (269-332)||(51016134-51016197)
[»] chr1 (1 HSPs)
chr1 (397-463)||(37996292-37996357)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 7793973 - 7793532
Alignment:
Q  13 cagagaggccattaaagatatttcacttcagggaaggacatcaaccaaacagctcaatgaagccaaaacattattaatttttgtttcaactagccaaaac 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7793973 cagagaggccattaaagatatttcatttcagggaaggacatcaaccaaacagctcaatgaagccaaaacattattaatttttgtttcaactagccaaaac 7793874  T
Q  113 ataatgtggaaagtgtttgttacaaaagtataagtcaaaaggtgttaatacagaagcaattatgttcgaaaaaacagaagggtgggcaaaaccacnnnnn 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  7793873 ataatgtggaaagtgtttgttacaaaagtataagtcaaaaggtgttaatacagaagcaattatgttcgaaaaaacagaagggtgggcaaaaccacaaaaa 7793774  T
Q  213 nngcagaaactcgtgtctatgataaagaattgataatagtggtggcaccaaatatatgatcacaattggaatatcacaagctccttagtaatgccaacat 312  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||    
T  7793773 aagcagaaactcgtgtctatgataaagaattgataatagtggtggcaccaaatatatgatcacaattagaatctcacaagctccttagtaatgctatcat 7793674  T
Q  313 attccagtaacaaacacaatcaaacgactcggacaacaaatagaacttaaatcaattctcactttcaatgcaatagagcaaaacaaaattaaaacgattg 412  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  7793673 attccagtaacaaacacaatcaaacaactcagacaacaaatagaacttaaaacaattctcactttcaatgcaatagagtaaaacaaaattaaaacgattg 7793574  T
Q  413 atccaaacatactcattatcgagccactatggtagtccaccc 454  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  7793573 atccaaacatactcgttatcgagccactatggtagtccaccc 7793532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 465
Target Start/End: Original strand, 7895886 - 7896017
Alignment:
Q  330 aatcaaacgactcggacaacaaatagaacttaaatcaattctcactttcaatgcaatagagcaaaacaaaattaaaacgattgatccaaacatactcatt 429  Q
    |||||||| || | |||||||||||| ||||  | ||||||||||||||||||||||| ||||||| ||| ||||||      ||||||||||| |||||    
T  7895886 aatcaaacaacactgacaacaaataggacttgtaacaattctcactttcaatgcaataaagcaaaataaatttaaaa----gcatccaaacataatcatt 7895981  T
Q  430 atcgagccactatggtagtccaccctagaatttgtc 465  Q
    | | || ||| |||||||||||| ||||||||||||    
T  7895982 accaagacacaatggtagtccactctagaatttgtc 7896017  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 475
Target Start/End: Complemental strand, 7868226 - 7868117
Alignment:
Q  365 caattctcactttcaatgcaatagagcaaaacaaaattaaaacgattgatccaaacatactcattatcgagccactatggtagtccaccctagaatttgt 464  Q
    ||||||||||||| ||| |||||||| |||  ||||||| ||| ||| |||| || | | | ||||||||| ||  ||||||| ||||||||||||||||    
T  7868226 caattctcacttttaattcaatagagtaaat-aaaattagaaccattaatcctaatagaataattatcgaggcagaatggtagaccaccctagaatttgt 7868128  T
Q  465 caatactaaaa 475  Q
    |||||| ||||    
T  7868127 caatacaaaaa 7868117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 7805488 - 7805529
Alignment:
Q  281 gaatatcacaagctccttagtaatgccaacatattccagtaa 322  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  7805488 gaatatcacaagctctttaataatgccaacatattccagtaa 7805529  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 14435310 - 14435347
Alignment:
Q  365 caattctcactttcaatgcaatagagcaaaacaaaatt 402  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  14435310 caattctcactttcaatgcaatagagcaaaataaaatt 14435347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 7815793 - 7815753
Alignment:
Q  366 aattctcactttcaatgcaatagagcaaaacaaaattaaaa 406  Q
    ||||||||||||||||| |||||||||||| ||||||||||    
T  7815793 aattctcactttcaatgtaatagagcaaaataaaattaaaa 7815753  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 7818709 - 7818651
Alignment:
Q  415 ccaaacatactcattatcgagccactatggtagtccaccctagaatttgtcaatactaa 473  Q
    ||||||| | ||||||||||||||| |||| ||||| ||||||| |||||| |||||||    
T  7818709 ccaaacagaatcattatcgagccacaatggcagtcctccctagattttgtccatactaa 7818651  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 43693234 - 43693332
Alignment:
Q  365 caattctcactttcaatgcaatagagcaaaacaaaattaaaacgattgatccaaacatactcattatcgagccactatggtagtccaccctagaatttg 463  Q
    ||||||||||||||||||||||| || |||  ||||| ||||| ||  ||||||||| | | |||||| |||||| |||| ||||||||||||||||||    
T  43693234 caattctcactttcaatgcaataaagaaaactaaaatgaaaaccatgcatccaaacaaaataattatctagccacaatggcagtccaccctagaatttg 43693332  T

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Target: scaffold0989 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 157 - 120
Alignment:
Q  365 caattctcactttcaatgcaatagagcaaaacaaaatt 402  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  157 caattctcactttcaatgcaatagagcaaaataaaatt 120  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 386
Target Start/End: Original strand, 32429101 - 32429186
Alignment:
Q  301 taatgccaacatattccagtaacaaacacaatcaaacgactcggacaacaaatagaacttaaatcaattctcactttcaatgcaat 386  Q
    ||||| |||||||||| || ||||| |||||| |||| |||| |||||||||||| | || || |||||||||| |||||| ||||    
T  32429101 taatggcaacatattctagcaacaatcacaataaaacaactcagacaacaaataggatttcaaacaattctcacattcaattcaat 32429186  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 24004671 - 24004707
Alignment:
Q  364 tcaattctcactttcaatgcaatagagcaaaacaaaa 400  Q
    |||||||||||||||||||||||||||||||| ||||    
T  24004671 tcaattctcactttcaatgcaatagagcaaaataaaa 24004707  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 51016134 - 51016197
Alignment:
Q  269 tgatcacaattggaatatcacaagctccttagtaatgccaacatattccagtaacaaacacaat 332  Q
    |||| |||||||||||||||||||||||||    || ||||||||||||| |||||| ||||||    
T  51016134 tgataacaattggaatatcacaagctcctttaatataccaacatattccattaacaagcacaat 51016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 463
Target Start/End: Original strand, 37996292 - 37996357
Alignment:
Q  397 aaaattaaaacgattgatccaaacatactcattatcgagccactatggtagtccaccctagaatttg 463  Q
    ||||||||||  ||||||||||| | | ||||||||||| ||| |||||||| ||||||||||||||    
T  37996292 aaaattaaaagcattgatccaaatagaatcattatcgag-cacgatggtagttcaccctagaatttg 37996357  T

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