View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11224_low_4 (Length: 341)

Name: NF11224_low_4
Description: NF11224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11224_low_4
NF11224_low_4
[»] chr3 (6 HSPs)
chr3 (14-185)||(50295498-50295669)
chr3 (251-341)||(50295332-50295422)
chr3 (17-92)||(42530739-42530813)
chr3 (20-102)||(46692060-46692141)
chr3 (79-128)||(42530734-42530783)
chr3 (112-156)||(2593544-2593588)
[»] chr7 (15 HSPs)
chr7 (21-137)||(11828572-11828688)
chr7 (16-122)||(21813823-21813929)
chr7 (17-127)||(46963810-46963919)
chr7 (16-92)||(15623189-15623264)
chr7 (16-92)||(15623096-15623171)
chr7 (251-319)||(46964000-46964068)
chr7 (61-156)||(11828581-11828676)
chr7 (80-166)||(21813810-21813896)
chr7 (251-319)||(44338121-44338189)
chr7 (16-92)||(44338474-44338549)
chr7 (17-88)||(44338386-44338456)
chr7 (17-123)||(44338260-44338364)
chr7 (79-156)||(46963840-46963917)
chr7 (79-133)||(44338280-44338334)
chr7 (79-129)||(44338376-44338426)
[»] chr5 (9 HSPs)
chr5 (16-126)||(9511777-9511887)
chr5 (251-341)||(24136625-24136714)
chr5 (58-183)||(9511751-9511876)
chr5 (61-176)||(11335396-11335509)
chr5 (16-126)||(11335382-11335490)
chr5 (14-92)||(24137049-24137125)
chr5 (17-92)||(24136894-24136969)
chr5 (16-64)||(24136984-24137032)
chr5 (97-152)||(24136896-24136951)
[»] chr4 (8 HSPs)
chr4 (23-156)||(54147652-54147785)
chr4 (251-341)||(16870282-16870371)
chr4 (17-127)||(16870622-16870731)
chr4 (251-319)||(16870473-16870541)
chr4 (28-106)||(42265415-42265492)
chr4 (79-156)||(16870624-16870701)
chr4 (17-59)||(54147873-54147915)
chr4 (84-152)||(42265431-42265498)
[»] chr6 (9 HSPs)
chr6 (253-341)||(13167218-13167306)
chr6 (251-341)||(21861833-21861923)
chr6 (17-126)||(13167363-13167470)
chr6 (16-92)||(21862244-21862319)
chr6 (15-92)||(21862147-21862223)
chr6 (84-144)||(13097915-13097975)
chr6 (18-59)||(28063633-28063674)
chr6 (285-341)||(9403001-9403057)
chr6 (16-92)||(28063540-28063615)
[»] chr2 (18 HSPs)
chr2 (16-152)||(38584094-38584234)
chr2 (47-161)||(1173572-1173686)
chr2 (251-340)||(38584348-38584436)
chr2 (20-156)||(1173484-1173619)
chr2 (47-156)||(1173541-1173650)
chr2 (58-172)||(38584105-38584219)
chr2 (27-133)||(38584136-38584246)
chr2 (251-319)||(8986035-8986103)
chr2 (16-92)||(1173294-1173369)
chr2 (23-127)||(8986184-8986287)
chr2 (27-126)||(1173583-1173682)
chr2 (78-156)||(32290562-32290644)
chr2 (16-92)||(1173387-1173462)
chr2 (106-172)||(32290581-32290647)
chr2 (79-156)||(8986186-8986263)
chr2 (123-152)||(1173308-1173337)
chr2 (47-129)||(32290558-32290644)
chr2 (58-91)||(32290651-32290684)
[»] chr1 (11 HSPs)
chr1 (17-90)||(15630034-15630107)
chr1 (24-125)||(2072366-2072466)
chr1 (24-125)||(2075896-2075996)
chr1 (66-137)||(19825094-19825165)
chr1 (32-106)||(19825091-19825165)
chr1 (61-122)||(15630047-15630108)
chr1 (97-153)||(15630052-15630108)
chr1 (77-135)||(2072388-2072446)
chr1 (85-172)||(19825082-19825165)
chr1 (17-92)||(15629942-15630016)
chr1 (77-135)||(2075918-2075976)
[»] chr8 (11 HSPs)
chr8 (251-319)||(20241798-20241866)
chr8 (16-92)||(20242151-20242226)
chr8 (251-319)||(20251201-20251269)
chr8 (17-88)||(20242063-20242133)
chr8 (17-88)||(20250934-20251004)
chr8 (17-123)||(20241937-20242041)
chr8 (17-123)||(20251026-20251130)
chr8 (79-133)||(20241957-20242011)
chr8 (79-129)||(20242053-20242103)
chr8 (79-129)||(20250964-20251014)
chr8 (79-133)||(20251056-20251110)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 50295669 - 50295498
Alignment:
Q  14 aggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgaccca 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  50295669 aggggggagaagaaaccaaattatgagtacttaactcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcactcgactca 50295570  T
Q  114 ccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcactatctcaactcatc 185  Q
    | |||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  50295569 cgaaacaaccaaattgtgagcacttgacccactaaacaaacaatcaaattgtgtgcactatctcaactcatc 50295498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 50295422 - 50295332
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  50295422 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccatagacagacatagacaaacaac 50295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 42530813 - 42530739
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||||||    
T  42530813 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc 42530739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 46692060 - 46692141
Alignment:
Q  20 gagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgag 102  Q
    ||||||||||||||||||||| |||  ||||||||||||| | || |||||||| |  ||||||||||||||| || ||||||    
T  46692060 gagaagaaaccaaattgtgagcactcgactcaccaaacaa-ctaaatgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 42530783 - 42530734
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaatt 128  Q
    |||||||||||||| ||||||||| ||||||| |||||||||| ||||||    
T  42530783 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatt 42530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 2593544 - 2593588
Alignment:
Q  112 caccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    ||||||| |||||||||||||||||| ||||||  ||||||||||    
T  2593544 caccaaagaaacaaattgtgagcacttgactcatcaaacaaacaa 2593588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 11828572 - 11828688
Alignment:
Q  21 agaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaaca 120  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||| || | |||||||| |||||| || |||||||||| ||||||||||||     
T  11828572 agaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaact 11828671  T
Q  121 aacaaattgtgagcact 137  Q
    |||||||||||||||||    
T  11828672 aacaaattgtgagcact 11828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 21813929 - 21813823
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacc 115  Q
    ||||||||| ||||||||||||| |||||||  ||||||| ||| |||| |||||| |||| ||||||||||||||| ||||||||||||| ||| ||||    
T  21813929 gggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcacc 21813830  T
Q  116 aaacaaa 122  Q
    |||||||    
T  21813829 aaacaaa 21813823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 46963810 - 46963919
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||    
T  46963810 ggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccacca 46963908  T
Q  117 aacaaacaaat 127  Q
    |||||||||||    
T  46963909 aacaaacaaat 46963919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 15623189 - 15623264
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||  |||||||||||||||    
T  15623189 gggggagaagaaacaaaattgtgagcactcaactcaccaaacaatcaaa-tgtgagaactagactcaccaaacaacc 15623264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 15623096 - 15623171
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||| ||||||||||  |||||||||||||||    
T  15623096 gggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 15623171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 46964000 - 46964068
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    |||||||||||||||||||||||||||||  || |||||||| ||||||||| |||| |||||||||||    
T  46964000 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaatcaaagcaacca 46964068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 11828581 - 11828676
Alignment:
Q  61 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    |||| |||||| ||| |||||||||||||||| || ||||||||| |||| ||||| |||| ||||||||||||||| ||| ||| |||| |||||    
T  11828581 caaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaactaacaa 11828676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 21813896 - 21813810
Alignment:
Q  80 tcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtg 166  Q
    ||||||| ||||| || |||||||||||||| |||||||||| |||| |||||||||| ||||||| ||||||| || | |||||||    
T  21813896 tcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaaataaaccaattgtg 21813810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 44338189 - 44338121
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||  ||||||||||||||||    
T  44338189 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaacca 44338121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 44338549 - 44338474
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||||||||||||||||| ||   |||||||| |||| |||| ||||||||||| |||||||||||||||    
T  44338549 gggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaacc 44338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 44338456 - 44338386
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 88  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  44338456 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 44338386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 44338364 - 44338260
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  44338364 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 44338267  T
Q  117 aacaaac 123  Q
    |||||||    
T  44338266 aacaaac 44338260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 46963840 - 46963917
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  46963840 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 46963917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 44338334 - 44338280
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 133  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  44338334 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 44338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 44338426 - 44338376
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 129  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  44338426 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 9511887 - 9511777
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacc 115  Q
    |||||| |||||| ||||||||||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||| ||||||||||||||||| ||||    
T  9511887 gggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcacc 9511788  T
Q  116 aaacaaacaaa 126  Q
    |||||||||||    
T  9511787 aaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 24136714 - 24136625
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  24136714 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgaaccaaagcaacca-agacagacatagacaaacaac 24136625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 9511876 - 9511751
Alignment:
Q  58 aatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaac 157  Q
    ||||||| |||||| | | |||||||||||||||| || |||||||||||||| |||||||||| | || |||||||||||||||||| ||||||||||     
T  9511876 aatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T
Q  158 caaattgtgtgcactatctcaactca 183  Q
    | ||||||| | ||||||| ||||||    
T  9511776 cgaattgtgaggactatcttaactca 9511751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 176
Target Start/End: Original strand, 11335396 - 11335509
Alignment:
Q  61 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaa 160  Q
    |||| |||||| | || ||||||||||||||| ||||||||| |||   |||||||||||||||||||||||||||| ||| | | |||||||||| | |    
T  11335396 caaattgtgagcattcgactcaccaaacaaccaaagtgtgagtactt--cccaccaaacaaacaaattgtgagcacttgacccgccaaacaaacaaacca 11335493  T
Q  161 attgtgtgcactatct 176  Q
    |||||| |||||||||    
T  11335494 attgtgagcactatct 11335509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 11335382 - 11335490
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacc 115  Q
    ||||||||||||||||||||||||| | |  ||||||||||||| ||||||||||| |||   | |||||||||| | || |||||||||| ||||| ||    
T  11335382 gggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgagtact--tcccaccaaacaaacaaattgtgagcacttgacccgcc 11335479  T
Q  116 aaacaaacaaa 126  Q
    |||||||||||    
T  11335480 aaacaaacaaa 11335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 24137125 - 24137049
Alignment:
Q  14 aggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||||  |||||||||||||||    
T  24137125 aggggggagaa-aaaccaaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 24137049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 24136969 - 24136894
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    |||| |||||||| |||||||||| |||  ||||||||||||| |||| |||||||| ||  ||||||||||||||    
T  24136969 ggggggaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaacc 24136894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 24137032 - 24136984
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaa 64  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| ||||    
T  24137032 gggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaa 24136984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 24136951 - 24136896
Alignment:
Q  97 tgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaa 152  Q
    |||||||||||||| |||||||||| ||||||||||| | ||| ||||| ||||||    
T  24136951 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaa 24136896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 54147785 - 54147652
Alignment:
Q  23 aagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 122  Q
    |||||||||||||||||| ||  |||||||||||||| |||| ||||||||||  ||||||||||||||  ||||||||||||  ||| |||||||||||    
T  54147785 aagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaactaaagtgtgagcacctgactcaccaaacaaa 54147686  T
Q  123 caaattgtgagcactcgactcactaaacaaacaa 156  Q
    |||||| |||||||| ||| ||| ||||||||||    
T  54147685 caaattatgagcacttgacccaccaaacaaacaa 54147652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 16870371 - 16870282
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||| ||| | |||||||||||||||    
T  16870371 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaaactgaaccaaaacaacca-agaaagacatagacgaacaac 16870282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 16870731 - 16870622
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||    
T  16870731 ggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccacca 16870633  T
Q  117 aacaaacaaat 127  Q
    |||||||||||    
T  16870632 aacaaacaaat 16870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 16870541 - 16870473
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    |||||||||||||||||||||||||||||  || |||||||| ||||||||| ||||||||||||||||    
T  16870541 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaaccaaagcaacca 16870473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 42265492 - 42265415
Alignment:
Q  28 accaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcact 106  Q
    ||||||||||||| |||| | ||||||||||| |||| |||||| |||| ||||||||||||||| ||  |||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaacagtgagcact 42265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 16870701 - 16870624
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  16870701 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 16870624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 54147915 - 54147873
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaa 59  Q
    |||||||||||||||||||||||| |||  |||||||||||||    
T  54147915 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaa 54147873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 42265498 - 42265431
Alignment:
Q  84 caaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaa 152  Q
    ||||| ||| || |||||||||| ||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42265498 caaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaa 42265431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 13167306 - 13167218
Alignment:
Q  253 aagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  13167306 aagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagctgacccaaagcaaccagagacaaacataaacgaacaac 13167218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 251 - 341
Target Start/End: Complemental strand, 21861923 - 21861833
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  21861923 tcaagataacttgaagaaccaaaacaaacaaaaccaaacgaaccaagacaagctgagccaaagcaaccagagacatacatagacgaacaac 21861833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 13167470 - 13167363
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||| ||||||||||||| | |   |||| ||||||| ||||||||||||| || ||||||||||||| | || || ||||||| |||||||||    
T  13167470 ggggagaagacaccaaattgtgagca-tacgctcagcaaacaa-caaagtgtgagaattcgactcaccaaacaagcaaattgcgagcacttgacccacca 13167373  T
Q  117 aacaaacaaa 126  Q
    ||||||||||    
T  13167372 aacaaacaaa 13167363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 21862319 - 21862244
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||||||||||||||||| |||  ||||||||||||| |||| ||||||| ||  |||||||||||||||    
T  21862319 gggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgagagctagactcaccaaacaacc 21862244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 21862223 - 21862147
Alignment:
Q  15 ggggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||| ||||||||||  |||| |||  ||||||||||||| |||| ||||||||||  |||||||||||||||    
T  21862223 ggggggagaggaaaccaaatattgagcactcgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 21862147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 13097975 - 13097915
Alignment:
Q  84 caaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactca 144  Q
    ||||||||| || |||||||||| | | || ||||||||||| ||||||||||||||||||    
T  13097975 caaacaaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactca 13097915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 28063633 - 28063674
Alignment:
Q  18 gggagaagaaaccaaattgtgagtacttaactcaccaaacaa 59  Q
    ||||||||||||||||||||||| || | |||||||||||||    
T  28063633 gggagaagaaaccaaattgtgagcacctgactcaccaaacaa 28063674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 341
Target Start/End: Complemental strand, 9403057 - 9403001
Alignment:
Q  285 caaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaac 341  Q
    |||||||| ||||||||| |||||||||||||||  | ||||||| ||| |||||||    
T  9403057 caaacgaaccaagacaagttgaaccaaagcaacccgaaacaaacaaagaggaacaac 9403001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 28063540 - 28063615
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||| ||||||| ||||||| ||| | | |||| ||||||||| |||| ||||||||||  |||||||||||||||    
T  28063540 gggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaa-tgtgagaactagactcaccaaacaacc 28063615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 38584094 - 38584234
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcg----acc 111  Q
    ||||||||| ||| ||||||||||| | |||||||||||||||| |||| |||||| ||| |||||||||||| ||| || |||||||||| |    |||    
T  38584094 gggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcacc 38584193  T
Q  112 caccaaacaaacaaattgtgagcactcgactcactaaacaa 152  Q
     ||||||||| |||| |||||||||||||||||| ||||||    
T  38584194 aaccaaacaaccaaaatgtgagcactcgactcaccaaacaa 38584234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 1173572 - 1173686
Alignment:
Q  47 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcact 146  Q
    ||||||||||||| |||| | |||| |||| ||||||||||||| | || | |||||||||||||||||||||||||||||| |||||||| ||| |||     
T  1173572 actcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccacc 1173671  T
Q  147 aaacaaacaaccaaa 161  Q
    |||||||||| ||||    
T  1173672 aaacaaacaaacaaa 1173686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 38584348 - 38584436
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaaccacagacaaacatagacgaacaa 340  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| ||| | ||||||||||||||    
T  38584348 tcaagacaacttgaagaaccaaaacgaacaaaaccaaacgaaccaagacaagttgaaccaaagaaacca-agaaagacatagacgaacaa 38584436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 1173484 - 1173619
Alignment:
Q  20 gagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaac 119  Q
    ||||||||||||||||||||| |||  ||||||||||||| |||||||||||  ||  ||||||||||||| | |  |||||||||| ||| ||||||||    
T  1173484 gagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgagcgct-tactcaccaaacaaacaacatgtgagcactagactcaccaaac 1173582  T
Q  120 aaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    || |||| | |||| ||||||||||| ||||||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaa 1173619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 1173541 - 1173650
Alignment:
Q  47 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcact 146  Q
    ||||||||||||| |||  |||||| |||  ||||||||||||||| || | |||| ||||||| ||||||||||||||||| |||||||||||| |||     
T  1173541 actcaccaaacaaacaacatgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccacc 1173640  T
Q  147 aaacaaacaa 156  Q
    ||||||||||    
T  1173641 aaacaaacaa 1173650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 38584105 - 38584219
Alignment:
Q  58 aatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaac 157  Q
    ||||||| |||||| | | |||||||||||||||| || ||||||||||  || |||||||| | ||||||||||||||| ||||||| || ||||||||    
T  38584105 aatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaac 38584204  T
Q  158 caaattgtgtgcact 172  Q
    |||| |||| |||||    
T  38584205 caaaatgtgagcact 38584219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 38584136 - 38584246
Alignment:
Q  27 aaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcacca----aacaacccaagtgtgagcactcgacccaccaaacaaa 122  Q
    |||||||||||||| |||||||||||||||| | |||| |||||| |||  ||||||||    ||||||| || |||||||||||||| ||||||||||     
T  38584136 aaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaag 38584235  T
Q  123 caaattgtgag 133  Q
    |||||||||||    
T  38584236 caaattgtgag 38584246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 8986103 - 8986035
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    |||||||||||||||||||||||||||||  || |||||||| ||||||||| ||||||||||||||||    
T  8986103 tcaagacaacttgaagaaccaaaacgaacgtaaccaaacgaaccaagacaagttgaaccaaagcaacca 8986035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 1173294 - 1173369
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||||||||||||||||| |||  |||||| ||||||||||| ||||||||||  |||||||||||||||    
T  1173294 gggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaacc 1173369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 8986287 - 8986184
Alignment:
Q  23 aagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 122  Q
    |||||||||||||||||| || |  |||||||||||| ||||||||||||| || ||||||||||||| | || | ||||  || |||||||||||||||    
T  8986287 aagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaa 8986189  T
Q  123 caaat 127  Q
    |||||    
T  8986188 caaat 8986184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 1173583 - 1173682
Alignment:
Q  27 aaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaa 126  Q
    ||||||| | ||||||||  ||||||||||||| |||| | |||| |||| || |||||||||| | || | |||||||| |||||||||||||||||||    
T  1173583 aaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccaccaaacaaacaaa 1173682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 32290644 - 32290562
Alignment:
Q  78 actcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa----caaattgtgagcactcgactcactaaacaaacaa 156  Q
    ||||||||||||||| || |||||||||| ||||||||||| |||    ||||||||||||||| ||| ||| ||||||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaa 32290562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 1173387 - 1173462
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||| |||||||| |  |||||||||||||||    
T  1173387 gggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaacc 1173462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 32290647 - 32290581
Alignment:
Q  106 tcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcact 172  Q
    ||||| |||||||||| ||||||||||||||| ||| ||| ||| ||| |||||||||||| |||||    
T  32290647 tcgactcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcact 32290581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 8986263 - 8986186
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaa 156  Q
    |||||||||||||| ||||||||| | ||||| |||||||||| |||||| ||||  || ||| ||| ||||||||||    
T  8986263 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaa 8986186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 1173308 - 1173337
Alignment:
Q  123 caaattgtgagcactcgactcactaaacaa 152  Q
    ||||||||||||||||||||||||||||||    
T  1173308 caaattgtgagcactcgactcactaaacaa 1173337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 32290644 - 32290558
Alignment:
Q  47 actcaccaaacaatcaaagtgtgagaactcaactcaccaaacaa----cccaagtgtgagcactcgacccaccaaacaaacaaattg 129  Q
    ||||||||||||| |||| |||||| |||  || ||||||| ||    || || |||||||||| ||||||||||||||||||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaaattg 32290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 32290684 - 32290651
Alignment:
Q  58 aatcaaagtgtgagaactcaactcaccaaacaac 91  Q
    ||||||||||||||||||| ||||||||||||||    
T  32290684 aatcaaagtgtgagaactcgactcaccaaacaac 32290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 15630034 - 15630107
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaa 90  Q
    |||||||||||||||||||||||| |||  ||||||||||||| ||||||||||| |||| |||||||||||||    
T  15630034 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 2072366 - 2072466
Alignment:
Q  24 agaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaac 123  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||| ||||| ||||||| | || |||||||| || ||||||| | |||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattgtgagcaatc-acccacccaccaaac 2072464  T
Q  124 aa 125  Q
    ||    
T  2072465 aa 2072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 2075896 - 2075996
Alignment:
Q  24 agaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaac 123  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||| ||||  ||||||||| || |||||||| || ||||||| | |||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgagcaatc-acccacccaccaaac 2075994  T
Q  124 aa 125  Q
    ||    
T  2075995 aa 2075996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 19825094 - 19825165
Alignment:
Q  66 tgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcact 137  Q
    |||||| ||| |||||||||||||||| || |||||||||||||| | |||||||| |||||||||||||||    
T  19825094 tgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 19825091 - 19825165
Alignment:
Q  32 aattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcact 106  Q
    ||||||||| |||||||||||||||||| |||| |||||| |||| |||| |||||||||| || ||||||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 15630047 - 15630108
Alignment:
Q  61 caaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaa 122  Q
    |||| |||||| |||| ||||||||||||||| ||||||||||||||||| |||||||||||    
T  15630047 caaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaaa 15630108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 15630052 - 15630108
Alignment:
Q  97 tgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaa 153  Q
    |||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||    
T  15630052 tgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaaa 15630108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 2072388 - 2072446
Alignment:
Q  77 aactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagca 135  Q
    |||||||||||||||| |||| |||||||||||| || ||||||| |||||||||||||    
T  2072388 aactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattgtgagca 2072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 19825082 - 19825165
Alignment:
Q  85 aaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagcactcgactcactaaacaaacaaccaaattgtgtgcact 172  Q
    |||||| |||| ||||||||||  || |||||||||| ||||||||||||||||||||| |    ||||||||||||||||| |||||    
T  19825082 aaacaaaccaattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgc----caaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 15629942 - 15630016
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    |||||||||||||||||||||||| |||  ||||||||||||| |||| |||||||| |  |||||| ||||||||    
T  15629942 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaa-tgtgagaattagactcactaaacaacc 15630016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 2075918 - 2075976
Alignment:
Q  77 aactcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgagca 135  Q
    |||||||||||||||| |||| |||||||||||| |  ||||||| |||||||||||||    
T  2075918 aactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgagca 2075976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 20241866 - 20241798
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||  ||||||||||||||||    
T  20241866 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaacca 20241798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 20242226 - 20242151
Alignment:
Q  16 gggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacc 92  Q
    ||||||||||||||||||||||||| ||   |||||||| |||| |||| ||||||||||| |||||||||||||||    
T  20242226 gggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaa-tgtgagaactctactcaccaaacaacc 20242151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 20251201 - 20251269
Alignment:
Q  251 tcaagacaacttgaagaaccaaaacgaacaaaatcaaacgaatcaagacaagctgaaccaaagcaacca 319  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||| ||||  ||||||||||||||||    
T  20251201 tcaagacaacttgaaaaaccaaaacaaacaaaaccaaacgaaccaaaacaaattgaaccaaagcaacca 20251269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 20242133 - 20242063
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 88  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  20242133 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 20242063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 20250934 - 20251004
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaac 88  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||| |||||||||||    
T  20250934 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaac 20251004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 20242041 - 20241937
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  20242041 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 20241944  T
Q  117 aacaaac 123  Q
    |||||||    
T  20241943 aacaaac 20241937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 20251026 - 20251130
Alignment:
Q  17 ggggagaagaaaccaaattgtgagtacttaactcaccaaacaatcaaagtgtgagaactcaactcaccaaacaacccaagtgtgagcactcgacccacca 116  Q
    |||||||||||||||||||||||| ||    |||||||||||| |||| ||||||||||| ||||||||||||| | || | ||||  || |||||||||    
T  20251026 ggggagaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgct-gacccacca 20251123  T
Q  117 aacaaac 123  Q
    |||||||    
T  20251124 aacaaac 20251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 20242011 - 20241957
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 133  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  20242011 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20241957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 20242103 - 20242053
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 129  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  20242103 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 20250964 - 20251014
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattg 129  Q
    |||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  20250964 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 20251056 - 20251110
Alignment:
Q  79 ctcaccaaacaacccaagtgtgagcactcgacccaccaaacaaacaaattgtgag 133  Q
    |||||||||||||| || |||||| ||||||| |||||||||| |||||| ||||    
T  20251056 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgag 20251110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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