View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_11 (Length: 397)
Name: NF11225_high_11
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 48861675 - 48861293
Alignment:
| Q |
1 |
taccaagtaagcctttatcagtactaaaagaagaaccatagcaattgttgtcttcaattctaaaagatggagaccggaatctgttgctggttacatgagg |
100 |
Q |
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| T |
48861675 |
taccaagtaagcctttatcagtactaaaagaagaaccatagcaattgttgtcttcaattctaaaagatggagaacggaatctgttgctggttacatgagg |
48861576 |
T |
|
| Q |
101 |
accctgctgcaaaagggtgggtgagggtactaatagcaaccttggaggaagctccaaacacttgtcactactgggattagtgaagggcacaagtgcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48861575 |
accctgctgcaaaagggtgggtgagggtactaatagcaaccttggaggaagctccaaacacttgtcactactgggattagtgaagggcacaagtgcattg |
48861476 |
T |
|
| Q |
201 |
caaagccttggctttcctggttcttgttcccaaagaaatggtactgaacctgaggtttgcagtggtggagtcaccgtccccgttctctctggggattcca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48861475 |
caaagccttggctttcctggttcttgttcccaaagaaatggtactgaacctgaggtttgaagtggtggagtcaccgtccccgttctctctggggattcca |
48861376 |
T |
|
| Q |
301 |
tttgcatttgaattttcattgctgctggtgagacagagaacaaagggagcgttggtatgctgctgctctcttgctctgcctatgct |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| |
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| T |
48861375 |
tttgcatttgaattttcattgctgctggtgagacagagaacaaagggagccttggtatgc---tgctctcttgctctgcctttgct |
48861293 |
T |
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