View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_14 (Length: 371)
Name: NF11225_high_14
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_14 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 26413451 - 26413821
Alignment:
| Q |
1 |
gttggattgaggtggacagaaaaaatttctgattagtggatgagattcccgcgggtctgcaacatatgactgtagtggaattggttgatacaaagggaaa |
100 |
Q |
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| T |
26413451 |
gttggattgaggtggatggaaaaaatttctgattagtggatgagattgccgcgggtctgcaacatatgactgtagtggaattggttgatacaaagggaaa |
26413550 |
T |
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| Q |
101 |
ttggaataatcgaatgctcgattgattgcctaatgatatcagaaagaagactgactcaattctgccagtacatatgctctattgagtaaccatgaagcaa |
200 |
Q |
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| T |
26413551 |
ttggaataatcgaatgctcgattgattgcctaatgatatcagaaagaagactgactcaattctgccagtacatatgctctattgagtaaccatgaagcaa |
26413650 |
T |
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| Q |
201 |
tagaaggaaatgatattcggaaaagaatttggagactggaggtgcttgaaagagttagaagttttgtgtggattgtccttcgtgagaagctgatgactaa |
300 |
Q |
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| T |
26413651 |
tagaaagaaatgatattcggaaaagaatttagagactggaggtgcttgaaagagttagaagttttgtgtggattgtcctttgtgagaagccgatgactaa |
26413750 |
T |
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| Q |
301 |
tggaagaaagagtaagatgcatttaagcatgccattatgtgattactgcagagaagaggtcgaaacaactc |
371 |
Q |
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| T |
26413751 |
tggaagaaagagtaagatgcatttaagcatgccattatgtgattactgcagagaagaggtcaaaacaactc |
26413821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 239 - 368
Target Start/End: Original strand, 1536265 - 1536394
Alignment:
| Q |
239 |
gaggtgcttgaaagagttagaagttttgtgtggattgtccttcgtgagaagctgatgactaatggaagaaagagtaagatgcatttaagcatgccattat |
338 |
Q |
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| T |
1536265 |
gaggtgcctgaaagagttataagttttgtgtggattgtccttcatggaaagttaacgactaatgaaaggaagagtaagattcatttgagcatcccgttct |
1536364 |
T |
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| Q |
339 |
gtgattactgcagagaagaggtcgaaacaa |
368 |
Q |
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| T |
1536365 |
gtgattacttcagagaagaggtcgaaacaa |
1536394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 1531876 - 1531971
Alignment:
| Q |
72 |
gtagtggaattggttgatacaaagggaaattggaataatcgaatgctcgattgattgcctaatgatatcagaaagaagactgactcaattctgcca |
167 |
Q |
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| T |
1531876 |
gtagcggaattggttgatgcaaagggaaattggaataatcaaattctagattggctgcctaatgatatcagaaagaagattgactcaattctgcca |
1531971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 1463612 - 1463567
Alignment:
| Q |
326 |
agcatgccattatgtgattactgcagagaagaggtcgaaacaactc |
371 |
Q |
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| T |
1463612 |
agcatgccattctgtgattacttcagagaagaggttgaaacaactc |
1463567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 2765250 - 2765330
Alignment:
| Q |
291 |
tgatgactaatggaagaaagagtaagatgcatttaagcatgccattatgtgattactgcagagaagaggtcgaaacaactc |
371 |
Q |
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| T |
2765250 |
tgatgactaatggaaggaataataagatgcatttgagtgtgtcattctgtgactactgcagaaaggaggttgaaacaactc |
2765330 |
T |
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