View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_20 (Length: 329)
Name: NF11225_high_20
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 37206532 - 37206641
Alignment:
| Q |
17 |
tatactctgtcatgtcatgtgcattctcttctcattcaaaagggtttgtgtctcacatttttagagttgaggtatgctctatttaggatattggatggaa |
116 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37206532 |
tatactgtgtcatgtcatgtgcattctcttctcattcaaaagggtttgtgtctcacatttttagagttgaggtatgctctatttaggatattggattgaa |
37206631 |
T |
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| Q |
117 |
gacatgtagc |
126 |
Q |
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| T |
37206632 |
gacatgtagc |
37206641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 37206708 - 37206824
Alignment:
| Q |
190 |
tcatgtattttgcatttcctctcttgtatcctctcaccggcggaccgttatgcctcatcatcgcttattgctaccatctcaatcaatcacagcatctacc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37206708 |
tcatgtattttgcatttcctctcttgtatcctctcaccggcggaccgttatgcctcatcatcgcttattgctaccatctcaatcaatcacagcatctacc |
37206807 |
T |
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| Q |
290 |
gtcttcccctcatctcc |
306 |
Q |
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|| || |||| ||||| |
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| T |
37206808 |
ctcatctcctcctctcc |
37206824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37161252 - 37161289
Alignment:
| Q |
17 |
tatactctgtcatgtcatgtgcattctcttctcattca |
54 |
Q |
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| T |
37161252 |
tatactctgtcatgccatgtgcattctcttctcattca |
37161289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 37205800 - 37205839
Alignment:
| Q |
29 |
tgtcatgtgcattctcttctcattcaaaagggtttgtgtct |
69 |
Q |
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| T |
37205800 |
tgtcatgtgcattctcttctcattcataa-ggtttgtgtct |
37205839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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