View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_23 (Length: 291)
Name: NF11225_high_23
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_23 |
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| [»] scaffold0570 (1 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 23353516 - 23353257
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaacaataatcatttgtagaagtgaaccctgcatacacttatcacaca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23353516 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaacaataatcatttgtagaagtgaaccctgcatacacttatcacaca |
23353417 |
T |
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| Q |
120 |
attttttaaatctgtattttccatccatacacttgttacgttgatatatatgatacaggtagccactgccaccaggttgactataaattttgtatactag |
219 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23353416 |
atttgttaaatctgtattttccatccatacacttgttacgttg----atatgatacaggtagccactgccaccaggttgactataaattttgtatactag |
23353321 |
T |
|
| Q |
220 |
ttaataatcatatagatgtactcttcttctatggtatttgttagacttgtaaattcttcttctc |
283 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
23353320 |
ttaataatcatatagatgtactcttcttctatgatatttgttagacttgtaaatccttcttctc |
23353257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 23480353 - 23480297
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaaca |
76 |
Q |
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|||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
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| T |
23480353 |
ggaaatgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaaca |
23480297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 23441311 - 23441233
Alignment:
| Q |
196 |
ttgactataaattttgtatactagttaataatcatatagatgtactcttcttctatggtatttgttagacttgtaaattcttcttc |
281 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| |||||||| |
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| T |
23441311 |
ttgactataaattttgtatacta-------atcatatagatgtacttttctactattgtatttgttagacttgtaaaatcttcttc |
23441233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 23473843 - 23473765
Alignment:
| Q |
196 |
ttgactataaattttgtatactagttaataatcatatagatgtactcttcttctatggtatttgttagacttgtaaattcttcttc |
281 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| |||||||| |
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| T |
23473843 |
ttgactataaattttgtatacta-------atcatatagatgtacttttctactattgtatttgttagacttgtaaaatcttcttc |
23473765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 23448903 - 23448845
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaacaat |
78 |
Q |
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||||||||||||| |||| ||||||||||||| || ||||| ||||||||||||||||| |
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| T |
23448903 |
ggaaatgaacataaatttgagaaaatgaaagctaataataactttagaaagtaaacaat |
23448845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 23500666 - 23500608
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaacaat |
78 |
Q |
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||||||||||||| |||| ||||||||||||| || ||||| ||||||||||||||||| |
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| T |
23500666 |
ggaaatgaacataaatttgagaaaatgaaagctaataataactttagaaagtaaacaat |
23500608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 23455431 - 23455384
Alignment:
| Q |
224 |
taatcatatagatgtactcttcttctatggtatttgttagacttgtaa |
271 |
Q |
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|||||||||||||||| | ||||||||| ||||||||||||||||||| |
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| T |
23455431 |
taatcatatagatgtatttttcttctattgtatttgttagacttgtaa |
23455384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 21087173 - 21087125
Alignment:
| Q |
224 |
taatcatatagatgtactcttcttctatggtatttgttagacttgtaaa |
272 |
Q |
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||||||||||||| ||| |||||||||||||||| ||||||||||||| |
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| T |
21087173 |
taatcatatagatacacttttcttctatggtatttattagacttgtaaa |
21087125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 23465055 - 23465000
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaac |
75 |
Q |
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|
||||||||||||| |||||||||| |||| | ||| ||||||||||||||||||| |
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| T |
23465055 |
ggaaatgaacataaattttagaaattgaagacgaaatataattttagaaagtaaac |
23465000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 21087313 - 21087268
Alignment:
| Q |
99 |
cctgcatacacttatcacacaattttttaaatctgtattttccatc |
144 |
Q |
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||||||||||||||||||||| ||||| ||||||||| | |||||| |
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| T |
21087313 |
cctgcatacacttatcacacagtttttcaaatctgtactatccatc |
21087268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 10169 - 10225
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaaca |
76 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10169 |
ggaaatgaacataaattttagaaaatgaaagctaaaaataattttagaaagtaaaca |
10225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 13171 - 13115
Alignment:
| Q |
20 |
ggaaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaaca |
76 |
Q |
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|||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |
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|
| T |
13171 |
ggaaatgaacatagattttaaaaaatgaaagctaaaattaattttagaaagtaaaca |
13115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 45301895 - 45301949
Alignment:
| Q |
22 |
aaatgaacatagattttagaaaatgaaagcaaaaaataattttagaaagtaaaca |
76 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||| |||||||||||||||| |
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|
| T |
45301895 |
aaatgaacataaattttggaaaatgaaagctgaaaatgtttttagaaagtaaaca |
45301949 |
T |
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