View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11225_high_4 (Length: 622)
Name: NF11225_high_4
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 7 - 607
Target Start/End: Original strand, 39662699 - 39663299
Alignment:
| Q |
7 |
gaagcaaaggattgcatatgattcccgagaccaatcatagcacttcatttgaaagaaatacttttctctcgcagacttagataaagactcttttcgtcta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39662699 |
gaagcaaaggattgcatatgattcccgagaccaatcatagcacttcatttcaaagaaatacttttctctcgcagacttagataaagactcttttcgtcta |
39662798 |
T |
|
| Q |
107 |
caaagaacctttaccttttactcctatgaatgaaaagaaggcaagcagagcaagacacggtaatatacataacataaacatctaatagcttggaaattaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
39662799 |
caaagaacctttaccttttactcctatgaatgaaaagaaggcaagcagagcaagacacggtaatatacatgacgcaaacatctaatagcttggaaattaa |
39662898 |
T |
|
| Q |
207 |
gcatttaaaacttcaaagttctacggaataaattggggcatgtttatagataactttgcaggaaaaagagcacgcaacactacactattagacattcacc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39662899 |
gcatttaaaacttcaaagttctacggaataaattggggcatgtttatagataactttgcaggaaaaagagcacgcaacactacactattagacattcacc |
39662998 |
T |
|
| Q |
307 |
aactcataatataaaagttgtaaatcaaatcaaatatctcatcaaatacttgcgaagtacaaccttaacagaacaaaggagagtatgtcatgaatttcta |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39662999 |
aactcataatataaaagttgtaaatcaaatcaaatgtctcatcaaatacttgcgaagtacaaccttaacagaacaaaggagagtatgtcatgaatttcta |
39663098 |
T |
|
| Q |
407 |
tgctaatttctgtttacatacaagaaaataaaaccaatgccaaaaattatgcttcagcaactaaatttttagaattaatatgtgatcagtaatgctaatg |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39663099 |
tgctaatttctgtttacatacaagaaaataaaaccaatgccaaaaattatgcttcagcaactaaatttttagaattaatatgtgatcagtaatgctaatg |
39663198 |
T |
|
| Q |
507 |
agaggttggcatttcatacaacaatagaaaatagccgaaaatcaacctcaaaaccggatcctcgcacttaaatgcagaagaatcaaacaggggttggtat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39663199 |
agaggttggcatttcatacaacaatagaaaatagccaaaaatcaacctcaaaaccggatcctcgcacttaaatgcagaagaatcaaacaggggttggtat |
39663298 |
T |
|
| Q |
607 |
t |
607 |
Q |
| |
|
| |
|
|
| T |
39663299 |
t |
39663299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 358
Target Start/End: Original strand, 40100650 - 40100713
Alignment:
| Q |
295 |
tagacattcaccaactcataatataaaag-ttgtaaatcaaatcaaatatctcatcaaatacttg |
358 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
40100650 |
tagacattcaccaaatcataatatagaagtttgtaaatcaaatc-aatatctcataaaacacttg |
40100713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University