View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_6 (Length: 467)
Name: NF11225_high_6
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 32881902 - 32882338
Alignment:
| Q |
19 |
aaaatcgcatctcatttcattgaaccttcttccttcgagttcgtctcaccacaataactaactacttccgttaccttttcttttctctcccaacactcca |
118 |
Q |
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| T |
32881902 |
aaaatcgcatctcatttcattgaaccttcttccttcgagttcgtctcaccacaataactgactacttccgttaccttttcttttctctcccaacactcca |
32882001 |
T |
|
| Q |
119 |
tctcaaaattaatccatatacttcatgtaatgtaattaaaattcatatagtatagtatgtgttttgaccaagactttgtctttgtccttccattcacatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32882002 |
tctcaaaattaatccatatacttcatgtaatgtaattaaaattcatatagtata-----tgttttgaccaagactttgtctttgtccttccattcacatt |
32882096 |
T |
|
| Q |
219 |
aattcaatttattttacatttttcataaatctgctacctagacgtaaccgtttttattttctttcttataaactcgcctcacgcatattccgcttcccgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32882097 |
aattcaatttattttacatttttcataaatctgctacctagacgtaaccgtttttattttctttcttataaactcgcctcacgcatattccgcttcccgc |
32882196 |
T |
|
| Q |
319 |
ctccgttccgttccatcttc-ttattttctgacagtgatcgccttaagggcccatgaagcttctctcaatcaccgccgtcaaccaccgccgccacgtcac |
417 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
32882197 |
ctccgttccgttccttcttctttattttctgacagtgatcgccttaagggcccatgaagcttctctcaatcaccgccgtcaatcaccgtcgccacgtcac |
32882296 |
T |
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| Q |
418 |
cttcctccaattcaaacactaatatcatgcaccctctctgct |
459 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
32882297 |
cttcctccaattcaaacactaatatcatgcatcctttctgct |
32882338 |
T |
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