View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_high_8 (Length: 464)
Name: NF11225_high_8
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 52272638 - 52272202
Alignment:
| Q |
18 |
tatagaagatatcaaatataactgatttatttttgcccttgaaatctttgtgttagtttattacatgggagatgttggttttcatcatgttaatattgct |
117 |
Q |
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| T |
52272638 |
tatagaagatatcaaatataactgatttatttttgcccttgaaatctttgtgttagtttattacatgggagatgttggttttcatcatgttaatattgct |
52272539 |
T |
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| Q |
118 |
atctaaatcattgcttatgatgagtttcaggatgtggtttcagaaactatacatgcatttcgagctcccgttgatgatacccaggtattctgtcacccat |
217 |
Q |
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| T |
52272538 |
atctaaatcattgcttatgatgagtttcaggatgtggtttcagaaactatacatgcatttcgagctcccgttgatgatacccaggtattctgtcacccat |
52272439 |
T |
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| Q |
218 |
ttattcagctgctttcttaaaaatgtagattttgttcatcaagtgcttatttgtctttgatttctaggatctcttttctgattctgaaataaatgatatt |
317 |
Q |
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| T |
52272438 |
ttattcagacgctttcttaaaaatgtagattttgttcaccaagtgcttatttgtctttgatttctaggatctcttttctgattctgaaataaatgatatt |
52272339 |
T |
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| Q |
318 |
aaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgccccatctatgctttcaatgaacttgaaacttgattctgctcctgttg |
417 |
Q |
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| T |
52272338 |
aaagaagaggccctaaatgggaagttgaataagccttccgaagaagtgtttgccccatctatgctttcaatgaacttgaaacttgattctgctcctgttg |
52272239 |
T |
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| Q |
418 |
atgatgatatgtaagtttttagatgtttcttcctttg |
454 |
Q |
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| T |
52272238 |
atgatgatatgtaagtttttagatgtttcttcctttg |
52272202 |
T |
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