View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11225_low_1 (Length: 1022)
Name: NF11225_low_1
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 970; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 970; E-Value: 0
Query Start/End: Original strand, 15 - 1004
Target Start/End: Complemental strand, 50110921 - 50109932
Alignment:
| Q |
15 |
caaaggggtatggctaatgatgtttttatcaagcatgagggtgaaccattcatggcacaagtttggccgggagcagtgtactttcctgattttctcaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50110921 |
caaaggggtatggctaatgatgtttttatcaagcatgagggtgaaccattcttggcacaagtttggccaggagcagtgtactttcctgattttctcaatc |
50110822 |
T |
|
| Q |
115 |
ctaaaacagtttcttggtggggtgatgagattcgccgcttccatgaacttgtcccagttgatggcttatggattgacatgaatgaagcttcaaatttttg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110821 |
ctaaaacagtttcttggtggggtgatgagattcgccgcttccatgaacttgtcccagttgatggcttatggattgacatgaatgaagcttcaaatttttg |
50110722 |
T |
|
| Q |
215 |
ctctggtaagtgcacaattcctacaggaaaggtgtgccccagtggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacgg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50110721 |
ctctggtaagtgcacaattcctacaggaaaggtgtgccccagtggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacgg |
50110622 |
T |
|
| Q |
315 |
tgggatgatcctccctataaaattaatgcttcaggattacaagctcctataggtttcaaaactatagccacaagtgcagtccactataatggcattttgg |
414 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110621 |
tgggatgatcctccctacaaaattaatgcttcaggattacaagctcctattggtttcaaaactatagccacaagtgcagtccactataatggcattttgg |
50110522 |
T |
|
| Q |
415 |
aatatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgctc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110521 |
aatatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgctc |
50110422 |
T |
|
| Q |
515 |
tacttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaatttt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110421 |
tacttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaatttt |
50110322 |
T |
|
| Q |
615 |
ggaatatttggtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttct |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110321 |
ggaatatttggtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttct |
50110222 |
T |
|
| Q |
715 |
atccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgag |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110221 |
atccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatgag |
50110122 |
T |
|
| Q |
815 |
gtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcttctcattcccaacttatatt |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110121 |
gtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggagccccaattgctaggcctcttttcttctcattcccaacttatatt |
50110022 |
T |
|
| Q |
915 |
gaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagttgatgca |
1004 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50110021 |
gaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcctgttcttgagcaagggaaaacagaagttgatgca |
50109932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 672 - 998
Target Start/End: Complemental strand, 50120254 - 50119928
Alignment:
| Q |
672 |
actgaagagctttgcaataggtggattgaagttggtgctttctatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagt |
771 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||| ||| | || |||||||||||||||||||| | |
|
|
| T |
50120254 |
actgaagagctttgtaataggtggattgaagttggtgctttctatcctttctcgagggatcattcaagtgtcatttcccctagacaagaactttaccaat |
50120155 |
T |
|
| Q |
772 |
gggagacggtagccgaatcagctagaaatgcattggggatgaggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatc |
871 |
Q |
| |
|
||||| | ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||||||||||| | |
|
|
| T |
50120154 |
gggagtcagtagctgaatcagctagaaatgccttggggatgaggtataagcttctaccctatttttacacaataaactacgaggctcatattagtggagc |
50120055 |
T |
|
| Q |
872 |
cccaattgctaggcctcttttcttctcattcccaacttatattgaatgttatagtctaagcacccaattcttacttgggagcagcctaatgatttctcct |
971 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| | || ||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
50120054 |
tccaattgctaggcctcttttcttctcatttccaaattatattgaatgttatggcctcagcactcagttcttacttgggagcagtttaatgatttctcct |
50119955 |
T |
|
| Q |
972 |
gttcttgagcaagggaaaacagaagtt |
998 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
50119954 |
gttcttgagccagggaaaacagaagtt |
50119928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 50120944 - 50120744
Alignment:
| Q |
15 |
caaaggggtatggctaatgatgtttttatcaagcatgagggtgaaccattcatggcacaagtttggccgggagcagtgtactttcctgattttctcaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| || || || |||||||||||||||||||||| |
|
|
| T |
50120944 |
caaaggggtatggctaatgatgtttttatcaagtatgaaggtgaaccattcatggctatggtttggccaggggctgtttactttcctgattttctcaatc |
50120845 |
T |
|
| Q |
115 |
ctaaaacagtttcttggtggggtgatgagattcgccgcttccatgaacttgtcccagttgatggcttatggattgacatgaatgaagcttcaaatttttg |
214 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
50120844 |
ctaaaacagtttcttggtgggccgatgaaattcgccgcttccatgaacttgttcctattgatggattatggattgacatgaatgaagtttcaaatttttg |
50120745 |
T |
|
| Q |
215 |
c |
215 |
Q |
| |
|
| |
|
|
| T |
50120744 |
c |
50120744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 278 - 665
Target Start/End: Complemental strand, 50120675 - 50120288
Alignment:
| Q |
278 |
atgttgcttagattgcaaaaacatcacaagcacacggtgggatgatcctccctataaaattaatgcttcaggattacaagct-cctataggtttcaaaac |
376 |
Q |
| |
|
||||||||||||||| | |||||||||||||||| | |||||||||||||| || ||||| |||||||||||| || || | || ||||| | |||||| |
|
|
| T |
50120675 |
atgttgcttagattgtacaaacatcacaagcacaagatgggatgatcctccttacaaaatcaatgcttcaggaa-acgagattccaatagggtacaaaac |
50120577 |
T |
|
| Q |
377 |
tatagccacaagtgcagtccactataatggcattttggaatatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaa |
476 |
Q |
| |
|
||||||||| |||||||| || |||||||| | ||||||||||||||||||||| ||| |||||| ||| || |||||||||| |||||||| ||| |
|
|
| T |
50120576 |
tatagccactagtgcagttcattataatggtgtgttggaatatgatgctcatagtctttttggtttctctgaagccattgcaacacacaaggcactttcc |
50120477 |
T |
|
| Q |
477 |
gggcttcaaggaaaaaggccttttattttgacccgctctacttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatggg |
576 |
Q |
| |
|
| |||||||| ||||| || || ||||| | || || |||||||| || || ||||||||||| || ||||||||||||||||| | || ||||||| |
|
|
| T |
50120476 |
gaacttcaaggtaaaagaccattcgttttgtctcgttcgacttatgtaggatcaggcaaatatgctgctcattggacaggtgacaacaaaggaacatggg |
50120377 |
T |
|
| Q |
577 |
agaacttgagatactcaatatctactatgctgaattttggaatatttggtgtgccaatggttggttcagatatatgtggtttctatcca |
665 |
Q |
| |
|
|| | || ||||| | |||||||| || || || |||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50120376 |
aggatttaagatatactatatctaccatcctcaactttggaatatttggcatgccaatggttggggcagatatatgtggtttctatcca |
50120288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 15 - 910
Target Start/End: Original strand, 23933881 - 23934776
Alignment:
| Q |
15 |
caaaggggtatggctaatgatgtttttatcaagcatgagggtgaaccattcatggcacaagtttggccgggagcagtgtactttcctgattttctcaatc |
114 |
Q |
| |
|
||||||||| | || || |||||||| |||||| | || || ||||| ||| |||| ||||| ||||| || || || ||||||||||||||||||||| |
|
|
| T |
23933881 |
caaaggggtttagccaacgatgttttcatcaagtacgaaggcgaacctttcttggctcaagtgtggccaggggcggtaaactttcctgattttctcaatc |
23933980 |
T |
|
| Q |
115 |
ctaaaacagtttcttggtggggtgatgagattcgccgcttccatgaacttgtcccagttgatggcttatggattgacatgaatgaagcttcaaatttttg |
214 |
Q |
| |
|
| || || || |||||||| || ||||| ||||||||||||||||| || || ||||| ||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
23933981 |
caaagactgtaaattggtgggtcgacgagatccgccgcttccatgaactcgtacctgttgacggcctatggattgacatgaacgaagcttcaaatttctg |
23934080 |
T |
|
| Q |
215 |
ctctggtaagtgcacaattcctacaggaaagg-tgtgccccagtggaacaggacctggttgggtatgttgcttagattgcaaaaacatcacaagcacacg |
313 |
Q |
| |
|
|||||||| |||| |||||| | || | | | | || || | |||||||||||| || ||| |||||||||| || ||||| |||||||| | ||| | |
|
|
| T |
23934081 |
ttctggtaaatgcaaaattccca-agaacacgatatgtccgaatggaacaggaccaggatggatatgttgcttggactgcaagaacatcaccaaaacaag |
23934179 |
T |
|
| Q |
314 |
gtgggatgatcctccctataaaattaatgcttcaggattacaagctcctataggtttcaaaactatagccacaagtgcagtccactataatggcattttg |
413 |
Q |
| |
|
||||| |||||||| || ||||| || ||||| ||| | |||||||| || || | |||||| |||||||| |||||| ||||||||| || | ||| |
|
|
| T |
23934180 |
atgggacgatcctccttacaaaatcaacgcttcgggaattcaagctccaatcggatacaaaacaatagccaccagtgcaacccactataacggtgtcttg |
23934279 |
T |
|
| Q |
414 |
gaatatgatgctcatagtatttatggtttttctcaaaccattgcaactcacaaggcccttcaagggcttcaaggaaaaaggccttttattttgacccgct |
513 |
Q |
| |
|
|| ||||||||||||||||| |||||||| || ||| || | ||||||||||||| |||| || ||| |||| |||||||||||||||||| | || | |
|
|
| T |
23934280 |
gagtatgatgctcatagtatctatggtttctcgcaatccgtcgcaactcacaagggtcttcttggacttgaaggcaaaaggccttttattttgtcgcggt |
23934379 |
T |
|
| Q |
514 |
ctacttatgttggttctggcaaatatgcagcacattggacaggtgacaatcagggtacatgggagaacttgagatactcaatatctactatgctgaattt |
613 |
Q |
| |
|
| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || ||||||||||| || || || |||||||| || ||| ||||||| |
|
|
| T |
23934380 |
ccacttatgttggttcgggcaaatatgctgcacattggaccggtgacaatcaaggaacatgggagaatttaaggtattcaatatccacaatgttgaattt |
23934479 |
T |
|
| Q |
614 |
tggaatatttggtgtgccaatggttggttcagatatatgtggtttctatccacaacccactgaagagctttgcaataggtggattgaagttggtgctttc |
713 |
Q |
| |
|
|| ||||||||||| |||||||||||||| || |||||||| || || |||||||| |||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
23934480 |
cggtatatttggtgttccaatggttggttctgacatatgtggattttacccacaaccaactgaagaactatgcaatagatggattgaagttggtgctttc |
23934579 |
T |
|
| Q |
714 |
tatccattttcaagggaccatgcaaactactactctcctagacaagaactttaccagtgggagacggtagccgaatcagctagaaatgcattggggatga |
813 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||| || |||||||| |||||||| ||||| | ||||| ||||||| |||||||| || || || | |
|
|
| T |
23934580 |
tacccattttcaagagatcatgcaaactactactccccgagacaagagctttaccaatgggattcagtagctcaatcagcaagaaatgctttaggtataa |
23934679 |
T |
|
| Q |
814 |
ggtataagctcctaccctatctgtacaccctaaactatgaggctcatattagtggatccccaattgctaggcctcttttcttctcattcccaactta |
910 |
Q |
| |
|
|||| ||| | ||||| ||||| |||||| |||||||||| |||||| |||||||||| |||||||| || || ||||||||| | |||||| |||| |
|
|
| T |
23934680 |
ggtacaagattctaccgtatctttacaccttaaactatgaagctcatgttagtggatcaccaattgcaagaccacttttcttcactttcccatctta |
23934776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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