View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11225_low_10 (Length: 439)
Name: NF11225_low_10
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 38097847 - 38097531
Alignment:
| Q |
20 |
ttccctccatcggcacgagttatgttaatatgatcgagaacaatgttggtgcaaccgatgtttagttcacatttaagttctattgcatattcaccaactg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38097847 |
ttccctccatcggcacgagttatgttaatatgatcgagaacaatgttgttgcaaccgatgttgagttcacatttaagttcgattgcatattcaccaactg |
38097748 |
T |
|
| Q |
120 |
aggttcctcgtatgttgctgtaagtaacatcactaatttcaacggcactatctgcgttaggtttatacgcttggtcaataataacaggattcttcacttc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38097747 |
aggttcctcgtatgttgctgtaagtaacatcactaatttcaacggcactatctgcgttagggttatacgcttggtcaataatcacaggattcttcacttc |
38097648 |
T |
|
| Q |
220 |
attaagtatgatatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatgtatactctttttagaactatttttaat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||||||| |
|
|
| T |
38097647 |
attaagtatgatatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatatatactattcttataactatttttaaa |
38097548 |
T |
|
| Q |
320 |
ttgggtctaactcaact |
336 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
38097547 |
tttggtctaactcaact |
38097531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 336
Target Start/End: Complemental strand, 21552172 - 21551879
Alignment:
| Q |
39 |
ttatgttaatatgatcgagaacaatgttggtgcaaccgatgtttagttcacatttaagttctattgcatattcaccaactgaggttcctcgtatgttgct |
138 |
Q |
| |
|
|||||||||| | || |||||||||| |||||| |||||||| ||||||| |||||| | |||||||| |||| ||||||||| |||||||||| |
|
|
| T |
21552172 |
ttatgttaatgttattcagaacaatgtcggtgcagccgatgttgggttcacacagaagttcgactgcatatttaccagttgaggttccatgtatgttgct |
21552073 |
T |
|
| Q |
139 |
gtaagtaacatcactaatttcaacggcactatctgcgttaggtttatacgcttggtcaataataacaggattcttcacttcattaagtatgatatcttcg |
238 |
Q |
| |
|
| ||||||||||||| | ||| || || |||||| || |||| |||| |||| ||||| |||| |||||| |||| | ||||||||| |
|
|
| T |
21552072 |
gaaagtaacatcacttacttccactgcgctatcttgaactggaatataattctggttaatatacacagggttctcgacttcaacaagtgtaatatcttcg |
21551973 |
T |
|
| Q |
239 |
tatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatgtatactctttttagaactatttttaatttgggtctaactcaact |
336 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||||||||||| ||||||||| ||| | | ||| ||||| ||||||||| |||||||||||||| |
|
|
| T |
21551972 |
tatttaatgttccttgcatatccagatccaccctaattcaaa---caaaacatgaataataatctta-aactacttttaatttaggtctaactcaact |
21551879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 19056351 - 19056490
Alignment:
| Q |
196 |
aataataacaggattcttcacttcattaagtatgatatcttcgtatgtaatgttcctcgcatatccagatcctccctaattcaaataacaaaacatgtat |
295 |
Q |
| |
|
|||||||| ||| ||||| ||||| |||| | |||| ||||||||| || ||||| ||||| ||| |||||||||||||||| |||||||||| ||| |
|
|
| T |
19056351 |
aataataatagggttcttgacttctacaagtttaatattttcgtatgtgatcttccttgcatacccacttcctccctaattcaaacaacaaaacatatat |
19056450 |
T |
|
| Q |
296 |
actctttttagaactatttttaatttgggtctaactcaact |
336 |
Q |
| |
|
| || | |||| |||||| ||||||| | |||||||||| |
|
|
| T |
19056451 |
gttattatgagaa-tattttgaatttggatttaactcaact |
19056490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University