View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11225_low_11 (Length: 428)
Name: NF11225_low_11
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 21094119 - 21093954
Alignment:
| Q |
24 |
aacatgtcgaagttaattctacaactatctaatcaatttttgactgcttaaaaatggccaacagttaggaaacactcttcaaacctttaaactatatttt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
21094119 |
aacatgtcgaagttaattctacaactatctaatcaatttttgactgcttaaaaatggcca-------gggaacactcttcaaacctttaaactatatttt |
21094027 |
T |
|
| Q |
124 |
gtctagtgagcctatgacattcaattcaactctagaatcagtatattatatgcaataattcatacctgatctc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21094026 |
gtctagtgagcctatgacattcaattcaactctagaatcagtatattatatgcaataattcatacctgatctc |
21093954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 288 - 425
Target Start/End: Complemental strand, 21093863 - 21093727
Alignment:
| Q |
288 |
aatccatttcttcaataattgttattcttttctatatatcaacattgagaaaactctaagcttttaaagaacaagacattagggagcaatgatatagtta |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
21093863 |
aatccatttcttcaataattgttattcttttctatatatcaacattgagaaaactctaagcttttaaagaacaatacattagggagc-atgatatagtta |
21093765 |
T |
|
| Q |
388 |
ttatgctaatacaaacccaaaatcatagccatattctt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21093764 |
ttatgctaatacaaacccaaaatcatagccatattctt |
21093727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University