View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11225_low_13 (Length: 387)

Name: NF11225_low_13
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11225_low_13
NF11225_low_13
[»] chr8 (17 HSPs)
chr8 (16-376)||(36183408-36183768)
chr8 (171-276)||(36214837-36214943)
chr8 (148-258)||(36184957-36185067)
chr8 (161-369)||(36197123-36197345)
chr8 (148-258)||(36208141-36208251)
chr8 (150-276)||(36213572-36213705)
chr8 (150-258)||(36188749-36188857)
chr8 (148-256)||(36202669-36202777)
chr8 (150-259)||(36210230-36210339)
chr8 (150-252)||(36201286-36201388)
chr8 (19-95)||(36196976-36197050)
chr8 (49-95)||(36202557-36202603)
chr8 (49-92)||(36199150-36199193)
chr8 (16-100)||(36201141-36201223)
chr8 (210-259)||(36199307-36199356)
chr8 (316-369)||(36202851-36202904)
chr8 (317-369)||(36214997-36215049)


Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 36183408 - 36183768
Alignment:
Q  16 catgaagatcatagtgtacaactaggaggactgttgcagctccttcatcttagcacacaaaataagagctctttctgcagctgtcgtttaccaaaacaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183408 catgaagatcatagtgtacaactaggaggactgttgcagctccttcatcttagcacacaaaataagagctctttctgcagctgtcgtttaccaaaacaca 36183507  T
Q  116 tacaagtgaacttagctatattagtcttaccgtcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183508 tacaagtgaacttagctatattagtcttaccgtcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcac 36183607  T
Q  216 agttgctaagacgatcttttggaacaattgatctctctcagctcacttatagccgtttttataagatgctccattcttttatctggtccacgtaatccga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183608 agttgctaagacgatcttttggaacaattgatctctctcagctcacttatagccgtttttataagatgctccattcttttatctggtccacgtaatccga 36183707  T
Q  316 ttggtcactcactcttagtgcactcacaatctgttctttaaccctatcatccataatctgt 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36183708 ttggtcactcactcttagtgcactcacaatctgttctttaaccctatcatccataatctgt 36183768  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 36214837 - 36214943
Alignment:
Q  171 accaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc-acttatagcc 269  Q
    ||||||||||||| |||||| |||||||||  |||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||  ||||||||     
T  36214837 accaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgatctctctcagctcttcttatagct 36214936  T
Q  270 gttttta 276  Q
    |||||||    
T  36214937 gttttta 36214943  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 36184957 - 36185067
Alignment:
Q  148 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 247  Q
    |||||||| |||||||||||||||||||| |||||| ||||||   |||||||  | ||||  ||||||||||||  ||| |||||||||||||||||||    
T  36184957 tcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36185056  T
Q  248 ctctctcagct 258  Q
    |||||||||||    
T  36185057 ctctctcagct 36185067  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 161 - 369
Target Start/End: Original strand, 36197123 - 36197345
Alignment:
Q  161 ctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc- 259  Q
    ||||||||  ||||||| ||||| |||||| |||||||||  |||||| |||||||||||||  ||| ||||||||||| |||||||||||||||||||     
T  36197123 ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgatctctctcagctct 36197222  T
Q  260 acttatagccgtttttataagatgctccattcttttatctggtccacgtaatccga-------------ttggtcactcactcttagtgcactcacaatc 346  Q
     |||||||| ||||||  |  |||||  | |||||| ||||| |||| |||||| |             |||||| ||||||||||||||||||| |||     
T  36197223 tcttatagctgtttttgcagaatgcttgactcttttttctggcccacataatccaatgatattttctccttggtctctcactcttagtgcactcataatt 36197322  T
Q  347 tgttctttaaccctatcatccat 369  Q
    |||||||||||| ||||||||||    
T  36197323 tgttctttaaccttatcatccat 36197345  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 36208141 - 36208251
Alignment:
Q  148 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 247  Q
    |||||||| |||||||||||||||||||| |||||| ||||||   |||||||  | ||||  ||||||||||||  ||| |||||||||||||||||||    
T  36208141 tcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36208240  T
Q  248 ctctctcagct 258  Q
    |||||||||||    
T  36208241 ctctctcagct 36208251  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 36213572 - 36213705
Alignment:
Q  150 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttg------ctaagacgatcttttggaacaat 243  Q
    |||||||||||||||||||  ||||||||||||| |||||  |||||||||  |||||| |||||||||||      ||  ||| |||||||||||||||    
T  36213572 aaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaat 36213671  T
Q  244 tgatctctctcagctc-acttatagccgttttta 276  Q
    ||||||||||||||||  |||||||| |||||||    
T  36213672 tgatctctctcagctcttcttatagctgttttta 36213705  T

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Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 150 - 258
Target Start/End: Original strand, 36188749 - 36188857
Alignment:
Q  150 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 249  Q
    |||||||||||||||||||   ||||||| |||| |||||| |||||||||  |||||| ||| ||||||| |  ||| |||||||||||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgatct 36188848  T
Q  250 ctctcagct 258  Q
     ||||||||    
T  36188849 ttctcagct 36188857  T

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Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 36202669 - 36202777
Alignment:
Q  148 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 247  Q
    |||||||| |||| |||||||  ||||||||||||| |||||| |||||||||  ||||||  ||||| ||||||  ||| ||||||| |||||||||||    
T  36202669 tcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgat 36202768  T
Q  248 ctctctcag 256  Q
    |||||||||    
T  36202769 ctctctcag 36202777  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 36210230 - 36210339
Alignment:
Q  150 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 249  Q
    ||||||||||||||||||| | ||||||| |||| |||||| |||||||||  |||||| ||||||||||| |  ||| |||||||||||| | ||||||    
T  36210230 aaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaacgaatgatct 36210329  T
Q  250 ctctcagctc 259  Q
     |||| ||||    
T  36210330 ttctctgctc 36210339  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 36201286 - 36201388
Alignment:
Q  150 aaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgatct 249  Q
    |||||||||||||||||||  |||||| |||||| ||||||   |||||||  ||||||  ||||||||||||  |||  ||||||||||||||||||||    
T  36201286 aaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattgatct 36201385  T
Q  250 ctc 252  Q
    |||    
T  36201386 ctc 36201388  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 36196976 - 36197050
Alignment:
Q  19 gaagatcatagtgtacaactaggaggactgtt-gcagctccttcatcttagcacacaaaataagagctctttctgcag 95  Q
    ||||||||||  ||||||||||||   ||||| ||||||| ||||||||||||||||||| | |||||||||||||||    
T  36196976 gaagatcatacagtacaactagga---ctgtttgcagctctttcatcttagcacacaaaagatgagctctttctgcag 36197050  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 36202557 - 36202603
Alignment:
Q  49 ttgcagctccttcatcttagcacacaaaataagagctctttctgcag 95  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||    
T  36202557 ttgcagctccttcatcttagcacacagtagaagagctctttctgcag 36202603  T

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Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 36199150 - 36199193
Alignment:
Q  49 ttgcagctccttcatcttagcacacaaaataagagctctttctg 92  Q
    ||||||||| |||||||||||||||| || ||||||||||||||    
T  36199150 ttgcagctctttcatcttagcacacagaagaagagctctttctg 36199193  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 36201141 - 36201223
Alignment:
Q  16 catgaagatcatagtgtacaactaggaggactgtt-gcagctccttcatcttagcacacaaaataagagctctttctgcagctgtc 100  Q
    |||||||||||||  ||||||||||||   ||||| |||||||||||||||||||||| | || | ||||||| ||||||| ||||    
T  36201141 catgaagatcatacagtacaactagga---ctgtttgcagctccttcatcttagcacaaataagatgagctctatctgcagttgtc 36201223  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 36199307 - 36199356
Alignment:
Q  210 tgtcacagttgctaagacgatcttttggaacaattgatctctctcagctc 259  Q
    ||||||||||| |  ||| |||||||||||||||||||||||||| ||||    
T  36199307 tgtcacagttgttgtgacaatcttttggaacaattgatctctctcggctc 36199356  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 36202851 - 36202904
Alignment:
Q  316 ttggtcactcactcttagtgcactcacaatctgttctttaaccctatcatccat 369  Q
    |||||| |||||||||||||||  || |||||| || |||||||||||||||||    
T  36202851 ttggtctctcactcttagtgcatccataatctggtccttaaccctatcatccat 36202904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 36214997 - 36215049
Alignment:
Q  317 tggtcactcactcttagtgcactcacaatctgttctttaaccctatcatccat 369  Q
    ||||| |||||||||| |||||||  |||||||||||||||  ||||||||||    
T  36214997 tggtctctcactcttaatgcactcgtaatctgttctttaacattatcatccat 36215049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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