View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_14 (Length: 375)
Name: NF11225_low_14
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 14439148 - 14438779
Alignment:
| Q |
7 |
gtgagaagaatgtcttgcatttgattaaaaggactactctatttatctacccaaaaccacatatcattgtactcccttcatctataaatgaatgttgatt |
106 |
Q |
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| T |
14439148 |
gtgagaagaatgtcttgcatttgattaaagggactactctatttatttacccaaaaccacatatcattgtactcccttcatctataaatgaatgttgatt |
14439049 |
T |
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| Q |
107 |
aatattttttacacatagattaataaatacatttaactagtcaataaacatttcttnnnnnnnnnctagtcaataaacatgtcagttttccttaactaag |
206 |
Q |
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| T |
14439048 |
aatattttttacacatagattaataaatacatttaactagtcaataaacatttcttaaaaaaaaactagtcaatacacatgtcagttttccttaactaag |
14438949 |
T |
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| Q |
207 |
cttactattttgtaaacaaa-ggtccccattgctttcataggattcaattaaagaggcctagatggtgctatagttcttctctttcaaagattaatttca |
305 |
Q |
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| T |
14438948 |
cttactattttgtatacaaaaggtccccattgctttcataggattcaattaaagaggcctagatggtgctatagttcttctctttcaaagattaatttca |
14438849 |
T |
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| Q |
306 |
ttttatagctaaatctttaaattagccacatcatccataccactatttccaccaatcaaaattcgcataa |
375 |
Q |
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| T |
14438848 |
ttttatggctaaatctttaaattagccacatcatccataccactatttccaccaatcaaaattagcataa |
14438779 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 8432229 - 8432167
Alignment:
| Q |
245 |
aggattcaattaaagaggcctagatggtgctatagttcttctctttcaaagattaatttcatt |
307 |
Q |
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| T |
8432229 |
aggattcaactgaagaggcctaggtggagccattgttcttctcttccaaagattaatttcatt |
8432167 |
T |
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