View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11225_low_16 (Length: 369)

Name: NF11225_low_16
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11225_low_16
NF11225_low_16
[»] chr4 (15 HSPs)
chr4 (290-358)||(31961309-31961377)
chr4 (287-358)||(31897471-31897542)
chr4 (287-358)||(6318839-6318910)
chr4 (287-358)||(44360254-44360325)
chr4 (287-358)||(46372192-46372263)
chr4 (287-358)||(50869923-50869994)
chr4 (301-358)||(13262394-13262451)
chr4 (287-357)||(10209204-10209272)
chr4 (287-358)||(42285746-42285817)
chr4 (292-358)||(35555693-35555759)
chr4 (289-358)||(2589242-2589311)
chr4 (294-358)||(17900655-17900719)
chr4 (287-340)||(10775530-10775583)
chr4 (287-358)||(6478726-6478797)
chr4 (294-357)||(35622720-35622783)
[»] chr8 (6 HSPs)
chr8 (287-358)||(7531687-7531758)
chr8 (287-358)||(30812859-30812930)
chr8 (287-358)||(16351546-16351616)
chr8 (287-358)||(39953307-39953378)
chr8 (287-339)||(32043758-32043810)
chr8 (303-358)||(26685962-26686017)
[»] chr5 (11 HSPs)
chr5 (287-358)||(37065644-37065715)
chr5 (287-356)||(33667603-33667672)
chr5 (290-358)||(3442914-3442982)
chr5 (287-358)||(1525812-1525883)
chr5 (287-358)||(1935290-1935361)
chr5 (287-358)||(21916048-21916119)
chr5 (287-358)||(28411844-28411915)
chr5 (287-358)||(10082788-10082859)
chr5 (290-358)||(11002464-11002532)
chr5 (287-337)||(21952523-21952573)
chr5 (287-339)||(31635982-31636034)
[»] chr2 (10 HSPs)
chr2 (287-358)||(12489845-12489916)
chr2 (287-358)||(44437764-44437835)
chr2 (287-357)||(5759039-5759109)
chr2 (287-358)||(4598605-4598676)
chr2 (287-358)||(12470940-12471011)
chr2 (291-358)||(20129644-20129711)
chr2 (287-358)||(28960254-28960325)
chr2 (287-358)||(42543403-42543474)
chr2 (312-358)||(19334195-19334241)
chr2 (305-358)||(29968654-29968707)
[»] chr7 (6 HSPs)
chr7 (287-358)||(34745915-34745986)
chr7 (287-358)||(45558498-45558569)
chr7 (289-358)||(19119467-19119536)
chr7 (290-358)||(5336089-5336157)
chr7 (287-336)||(36514273-36514322)
chr7 (287-356)||(25578028-25578097)
[»] chr6 (3 HSPs)
chr6 (287-358)||(7513432-7513503)
chr6 (287-355)||(10617280-10617348)
chr6 (287-328)||(38931-38972)
[»] chr1 (11 HSPs)
chr1 (287-358)||(28528523-28528594)
chr1 (290-354)||(26016608-26016672)
chr1 (287-351)||(40419807-40419871)
chr1 (306-358)||(12261756-12261808)
chr1 (287-328)||(43898400-43898441)
chr1 (287-358)||(17640110-17640181)
chr1 (293-358)||(7083064-7083129)
chr1 (302-351)||(37263540-37263589)
chr1 (294-358)||(13578945-13579008)
chr1 (287-335)||(27637697-27637745)
chr1 (302-358)||(51584927-51584983)
[»] chr3 (3 HSPs)
chr3 (288-358)||(31454268-31454338)
chr3 (290-358)||(37351578-37351646)
chr3 (304-358)||(3987519-3987573)


Alignment Details
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 31961377 - 31961309
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||| |||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||    
T  31961377 gatctagagataaatgagttggagaaagacatggttgttgatagaacactatgacgtcgtttgattcat 31961309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 31897542 - 31897471
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| |||||||| || |||||||||| ||||| ||||||||||||    
T  31897542 aaggatctagagataaatgagttggagaaagacatggttgttgatagaacactatgacgccgtttgattcat 31897471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 6318839 - 6318910
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||  ||||||||||||||    
T  6318839 aaggatctagagaaaaatgaattggagaaaaacatggtttttgatagaactctatggtgtcgtttgattcat 6318910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 44360254 - 44360325
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||| ||| | ||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||    
T  44360254 aaggatcttgaggccaatgagttggagaaagacacggtttttgatagaacactatgacgtcgtttgattcat 44360325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 46372192 - 46372263
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||  |||| ||||||||||    
T  46372192 aaggatctagagataaatgagttggagaaagacatggtttttgatagaacaccgtagcgtcctttgattcat 46372263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 50869994 - 50869923
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| ||||||||| |||||| |||||||||||  ||||||||| || |||||||||||||||    
T  50869994 aaggatctagagataaatgagttagagaaagacatggtttttggtagaacactatggcgtcgtttgattcat 50869923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 13262394 - 13262451
Alignment:
Q  301 aaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||    
T  13262394 aaatgagttggagaaagacatggtttttgatagaaaactatgacgtcgtttgattcat 13262451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 10209204 - 10209272
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattca 357  Q
    |||||||||||||  ||||||||||||||| ||||||||||| |||||||||  || ||||||||||||||    
T  10209204 aaggatctagagattaatgagttggagaaagacatggtttttgatagaacac--tggcgtcgtttgattca 10209272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 42285817 - 42285746
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||| ||| || | | |||||||||||    
T  42285817 aaggatctagagataaatgagttggagaaagacatggtttttgatagaatactatggcattgtttgattcat 42285746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 35555759 - 35555693
Alignment:
Q  292 tctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||| |||||||||||||||| ||||||||||| |||| ||| | || |||||||||||||||    
T  35555759 tctagagataaatgagttggagaaagacatggtttttgatagtacagtatggcgtcgtttgattcat 35555693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 358
Target Start/End: Original strand, 2589242 - 2589311
Alignment:
Q  289 ggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||  |||||||||||  |||| ||||||||| |||||||||| || |||||||||||||||    
T  2589242 ggatctagagattaatgagttggatgaaaatatggtttttgatagaacactatggcgtcgtttgattcat 2589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 17900655 - 17900719
Alignment:
Q  294 tagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||| |||||||||| ||||| ||||||||||||||||| |||| || ||| |||||||||||    
T  17900655 tagagataaatgagttgtagaaagacatggtttttaatagagcactatggcgttgtttgattcat 17900719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 340
Target Start/End: Complemental strand, 10775583 - 10775530
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactg 340  Q
    ||||||||||| |  ||||||||||||||| ||||||||||| |||||||||||    
T  10775583 aaggatctagaaaacaatgagttggagaaagacatggtttttgatagaacactg 10775530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 6478797 - 6478726
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||  ||||||||| |||||| ||||||||||| ||| |||||| |  |||| ||||||||||    
T  6478797 aaggatctagaggtaaatgagttagagaaagacatggtttttgatacaacactatagcgtcctttgattcat 6478726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 35622783 - 35622720
Alignment:
Q  294 tagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattca 357  Q
    |||||| |||||||||||||||| ||||||||||| ||||||| ||  | | ||||||||||||    
T  35622783 tagagataaatgagttggagaaagacatggtttttgatagaacgctagggcatcgtttgattca 35622720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 7531758 - 7531687
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||  ||||||||||||||    
T  7531758 aaggatctagagataaatgagttggagaaagacatggtttttgatagaacactatggtgtcgtttgattcat 7531687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 30812930 - 30812859
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||| ||| ||||||||||| |||||||||| ||  ||||||||||||||    
T  30812930 aaggatctagagataaatgagttggaaaaagacatggtttttgatagaacactatggtgtcgtttgattcat 30812859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 16351546 - 16351616
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||  ||||||||| ||||| |||||||||||||||||||||| || | |||||||||||||    
T  16351546 aaggatctagagattaatgagttg-agaaagacatggtttttaatagaacactatggcatcgtttgattcat 16351616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 39953378 - 39953307
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| ||||||||| |||||||||||||||||| || | ||||| ||  || |||||||||||    
T  39953378 aaggatctagagataaatgagttagagaaaaacatggtttttgatgggacactatggagttgtttgattcat 39953307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 32043758 - 32043810
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacact 339  Q
    ||||||||| |||  ||||||||||||||| ||||||||||| ||||||||||    
T  32043758 aaggatctaaagatcaatgagttggagaaagacatggtttttgatagaacact 32043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 26686017 - 26685962
Alignment:
Q  303 atgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||| ||||||||||| |||||||||| ||  | ||||||||||||    
T  26686017 atgagttggagaaagacatggtttttgatagaacactatggtgccgtttgattcat 26685962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 37065644 - 37065715
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||| ||||||||||||||    
T  37065644 aaggatctagagataaatgagttggagaaagacatggtttttgatagagcactatgaagtcgtttgattcat 37065715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 33667603 - 33667672
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattc 356  Q
    |||||||||||||  ||||||||||||||| ||||||||||| |||||||||| || ||| |||||||||    
T  33667603 aaggatctagagattaatgagttggagaaagacatggtttttgatagaacactttggcgttgtttgattc 33667672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 3442982 - 3442914
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||  ||||| ||||||||| ||||||||||| |||||||||| || |||||||||||||||    
T  3442982 gatctagagattaatgaattggagaaagacatggtttttgatagaacactatggcgtcgtttgattcat 3442914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 1525812 - 1525883
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||| ||||| |||||||||||||||| ||||||||||| ||||||| || || ||| |||||||||||    
T  1525812 aaggatccagagataaatgagttggagaaagacatggtttttgatagaacgctatggcgttgtttgattcat 1525883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 1935290 - 1935361
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||| ||||||| | |||||||| ||  ||||||||||||||    
T  1935290 aaggatctagagataaatgagttggagaaagacaaggtttttgacagaacactatggtgtcgtttgattcat 1935361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 21916048 - 21916119
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||  ||||| ||||||| || |||| |||||||||||||    
T  21916048 aaggatctagagataaatgagttggagaaatacattatttttgatagaactctatgacatcgtttgattcat 21916119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 28411844 - 28411915
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||| ||||||||||||||| ||| | |||||||||| || ||| |||||||||||    
T  28411844 aaggatctagagataaatgacttggagaaaaacatgttttctgatagaacactatggcgttgtttgattcat 28411915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 10082859 - 10082788
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||  ||||||||||||||| |||||||||||  ||  ||||| ||||||||| ||||||||    
T  10082859 aaggatctagagattaatgagttggagaaagacatggtttttgttaacacactatgacgtcgtctgattcat 10082788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 11002532 - 11002464
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||| ||||||||||||||||  ||| |||||| |||||||||| || | | |||||||||||    
T  11002532 gatctagagataaatgagttggagaaaggcatagtttttgatagaacactatggcattgtttgattcat 11002464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 337
Target Start/End: Original strand, 21952523 - 21952573
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaaca 337  Q
    |||||||||||||  |||| |||||||||| ||||||||||| ||||||||    
T  21952523 aaggatctagagattaatgggttggagaaagacatggtttttgatagaaca 21952573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 31636034 - 31635982
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacact 339  Q
    |||||| ||||||  ||||||||||||||| |||||||||||  |||||||||    
T  31636034 aaggatatagagatcaatgagttggagaaacacatggtttttggtagaacact 31635982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 12489916 - 12489845
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| |||||| || |||||||||||||||    
T  12489916 aaggatctagagataaatgagttggagaaagacatggtttttgatataacactttggcgtcgtttgattcat 12489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 44437835 - 44437764
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||| || ||| |||| ||||||    
T  44437835 aaggatctagagataaatgagttggagaaaaacatggtttttgatagaacactatggcgttgtttaattcat 44437764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 5759109 - 5759039
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattca 357  Q
    |||||||||||||  ||||||||||||||| ||||||||||| |||||||||| ||  |||||||||||||    
T  5759109 aaggatctagagatcaatgagttggagaaagacatggtttttgatagaacactatggtgtcgtttgattca 5759039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 4598676 - 4598605
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| |||| | |||| |||||||||| || |||| ||||||||||    
T  4598676 aaggatctagagataaatgagttggagaaagacatagattttgatagaacactatggcgtcatttgattcat 4598605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 12471011 - 12470940
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| | |||| || ||||||||| |||||    
T  12471011 aaggatctagagataaatgagttggagaaagacatggtttttgatatatcactatggcgtcgtttgcttcat 12470940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 20129711 - 20129644
Alignment:
Q  291 atctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||  ||||| ||||||||| |||||||| |||||| |||||| ||||||||||||||||||    
T  20129711 atctagagattaatgaattggagaaatacatggttgttaatataacactatgacgtcgtttgattcat 20129644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 28960325 - 28960254
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| | ||||||||| ||||| |||| ||  ||||||||||||||    
T  28960325 aaggatctagagataaatgagttggagaaagatatggtttttgatagagcactatggtgtcgtttgattcat 28960254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 42543403 - 42543474
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| |||||||||||||||| || || ||||| ||||||| || || ||| |||||||||||    
T  42543403 aaggatctagagataaatgagttggagaaagacgtgctttttgatagaacgctatggcgttgtttgattcat 42543474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 358
Target Start/End: Complemental strand, 19334241 - 19334195
Alignment:
Q  312 agaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||| ||||||||||| |||||||||| ||||||| ||||||||||    
T  19334241 agaaagacatggtttttgatagaacactatgacgtcatttgattcat 19334195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 29968707 - 29968654
Alignment:
Q  305 gagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||  ||||||||| ||||||||||| || ||| |||||||||||    
T  29968707 gagttggagaaagccatggttttcaatagaacactatggcgttgtttgattcat 29968654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 34745915 - 34745986
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||||| || || ||| |||||||||||    
T  34745915 aaggatctaaagataaatgagttggagaaaaacatggtttttgatagaacgctatggcgttgtttgattcat 34745986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 45558498 - 45558569
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| ||||||||||| |||| ||||||||||| |||||||||| || |||| ||||||||||    
T  45558498 aaggatctagagataaatgagttggtgaaagacatggtttttgatagaacactatggcgtcatttgattcat 45558569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 19119536 - 19119467
Alignment:
Q  289 ggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||  |||||||| |||||| |||||| |||| ||| |||||| ||||||||||||||||||    
T  19119536 ggatctagagatcaatgagtttgagaaagacatggcttttgatacaacactatgacgtcgtttgattcat 19119467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 5336089 - 5336157
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||  ||||||||||||||| ||||||||||| || ||| ||| || |||||||||||||||    
T  5336089 gatctagagattaatgagttggagaaagacatggtttttgattgaatactatggcgtcgtttgattcat 5336157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 36514322 - 36514273
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaac 336  Q
    ||||||||||||| |||||| ||||||||| ||||||||||| |||||||    
T  36514322 aaggatctagagataaatgaattggagaaagacatggtttttgatagaac 36514273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 25578028 - 25578097
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattc 356  Q
    |||||||||||||  ||||| ||||||||| ||||||||||| ||| |||||| || ||| ||| |||||    
T  25578028 aaggatctagagattaatgaattggagaaagacatggtttttgataaaacactatggcgttgttagattc 25578097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 7513503 - 7513432
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||  ||||||||||||||| ||||||||||| |||||||||| || ||| |||||||||||    
T  7513503 aaggatctagagatgaatgagttggagaaagacatggtttttgatagaacactatggcgttgtttgattcat 7513432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 355
Target Start/End: Complemental strand, 10617348 - 10617280
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgatt 355  Q
    |||||||||||||  ||||||||||||||| ||||||||||| |||||||||| || ||| ||||||||    
T  10617348 aaggatctagagattaatgagttggagaaagacatggtttttgatagaacactttggcgttgtttgatt 10617280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 38931 - 38972
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggttttt 328  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  38931 aaggatctagagataaatgagttggagaaagacatggttttt 38972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 28528523 - 28528594
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||  ||||||||||||||| ||||||||||| ||||| |||| || |||||||||||||||    
T  28528523 aaggatctagagattaatgagttggagaaagacatggtttttgatagaccactatggcgtcgtttgattcat 28528594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 290 - 354
Target Start/End: Original strand, 26016608 - 26016672
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgat 354  Q
    |||||||||| ||||||||| ||||||||||||||||||  ||||||| |||| |||||||||||    
T  26016608 gatctagagataaatgagttagagaaaaacatggtttttggtagaacattgtggcgtcgtttgat 26016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 40419807 - 40419871
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgttt 351  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||| |||| || ||||||||    
T  40419807 aaggatctagagataaatgagttggagaaagacatggtttttgatagatcactatggcgtcgttt 40419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 12261808 - 12261756
Alignment:
Q  306 agttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||||||||||||||    
T  12261808 agttggagaaagacatggtttttgatagaacgctgtgatgtcgtttgattcat 12261756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 43898400 - 43898441
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggttttt 328  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  43898400 aaggatctagagattaatgagttggagaaaaacatggttttt 43898441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 17640181 - 17640110
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||||||  ||||||||||| ||||| || | || |||||||||| | || |||||||||||||||    
T  17640181 aaggatctagagattaatgagttggataaaaatattgcttgtaatagaacattatggcgtcgtttgattcat 17640110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 7083064 - 7083129
Alignment:
Q  293 ctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||  ||||||||||||||| |||| | || | |||||||||| || |||||||||||||||    
T  7083064 ctagagattaatgagttggagaaagacatcggttatgatagaacactatggcgtcgtttgattcat 7083129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 351
Target Start/End: Original strand, 37263540 - 37263589
Alignment:
Q  302 aatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgttt 351  Q
    ||||||||||||||| ||||| ||||| |||||||||| || ||||||||    
T  37263540 aatgagttggagaaacacatgatttttgatagaacactatggcgtcgttt 37263589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 13579008 - 13578945
Alignment:
Q  294 tagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||| ||||||||| ||||||  ||||  |||| |||||||||| ||||||||||||||||||    
T  13579008 tagagataaatgagtttgagaaag-catgaattttgatagaacactatgacgtcgtttgattcat 13578945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 27637745 - 27637697
Alignment:
Q  287 aaggatctagagacaaatgagttggagaaaaacatggtttttaatagaa 335  Q
    |||||||||| ||  ||||||||||||||| ||||||||||| ||||||    
T  27637745 aaggatctagtgatcaatgagttggagaaagacatggtttttgatagaa 27637697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 51584927 - 51584983
Alignment:
Q  302 aatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||| |||||||| |||| |||||| |||||||||| |||| | |||||||||||    
T  51584927 aatgagctggagaaagacattgtttttgatagaacactatgacattgtttgattcat 51584983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 358
Target Start/End: Complemental strand, 31454338 - 31454268
Alignment:
Q  288 aggatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    |||||||||| |  ||||| ||||||||| ||||||||||| |||||||||| || |||| ||||||||||    
T  31454338 aggatctagatattaatgaattggagaaagacatggtttttgatagaacactatggcgtcatttgattcat 31454268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 37351578 - 37351646
Alignment:
Q  290 gatctagagacaaatgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||  |||||| |||||||| | |||||||||  |||||||||  |||||||||||||||||    
T  37351578 gatctagagattaatgagatggagaaagatatggtttttgttagaacactacgacgtcgtttgattcat 37351646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 3987519 - 3987573
Alignment:
Q  304 tgagttggagaaaaacatggtttttaatagaacactgtgacgtcgtttgattcat 358  Q
    ||||||||||||| ||||||||||| |||| ||||| || ||| |||||||||||    
T  3987519 tgagttggagaaagacatggtttttgataggacactatggcgttgtttgattcat 3987573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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