View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11225_low_17 (Length: 367)

Name: NF11225_low_17
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11225_low_17
NF11225_low_17
[»] chr1 (3 HSPs)
chr1 (8-351)||(27424618-27424961)
chr1 (8-347)||(27403596-27403933)
chr1 (222-313)||(27449600-27449691)
[»] chr7 (1 HSPs)
chr7 (156-199)||(31924434-31924477)
[»] chr8 (1 HSPs)
chr8 (154-183)||(9653522-9653551)
[»] chr2 (1 HSPs)
chr2 (151-184)||(35722994-35723027)
[»] chr5 (1 HSPs)
chr5 (155-199)||(43035932-43035976)
[»] chr3 (3 HSPs)
chr3 (155-199)||(740883-740927)
chr3 (155-199)||(8091420-8091464)
chr3 (149-185)||(26643300-26643336)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 27424961 - 27424618
Alignment:
Q  8 gagatgaagaggattcgccagtcgcatatccaaatctttatcaccaaggctaattacataaaggtaagtttagtatttacataaaagtagaattcctagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27424961 gagatgaagaggattcgccagtcgcatatccaaatctttatcgcgaaagctaattacataaaggtaagtttagtatttacataaaagtagaattcctagt 27424862  T
Q  108 aagaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaatagaatgattgaatataataacatgtgtatctgaaa 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424861 atgaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaatagaatgattgaatataataacatgtgtatctgaaa 27424762  T
Q  208 attgaaaaccatttcattaccctgtgtgtatctgcattggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424761 attgaaaaccatttcattaccctgtgtgtatctgcattggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattctt 27424662  T
Q  308 gtttgcaatacggataggctttccagctgaacatgtagaataat 351  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  27424661 gtttgcaatacggataggcttcccagctgaacatgtagaataat 27424618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 27403933 - 27403596
Alignment:
Q  8 gagatgaagaggattcgccagtcgcatatccaaatctttatcaccaaggctaattacataaaggtaagtttagtatttacataaaagtagaattcctagc 107  Q
    ||||||||||||||| || |||||||||||||||||||| || ||||  ||||||||  ||||| || |||||||||||  |||||||||  || | ||     
T  27403933 gagatgaagaggatttgcgagtcgcatatccaaatctttgtccccaaacctaattaccgaaagggaaatttagtatttaggtaaaagtagtgttacaagt 27403834  T
Q  108 aagaagaaaattattatatctatattaatacatctaacaaaatactagtaataatttaagaaaatagaa-tgattgaatataataacatgtgtatctgaa 206  Q
    || | |||||| ||  ||||||| | |  ||||| ||||  | ||  |||||||||||||||||||||| || | | || ||| |||  ||||||||||     
T  27403833 aaaaggaaaatcatggtatctatctcag-acatcaaacatgacaccggtaataatttaagaaaatagaaatggtcgcatgtaaaaac--gtgtatctgag 27403737  T
Q  207 aattgaaaaccatttcattaccctgtgtgtatctgcattggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattct 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  27403736 aattgaagaccatttcattaccctgtgtgtatctgcattggcaagtcataggattgagcaacatccagactttgcaagaagatgtagtcgataagattct 27403637  T
Q  307 tgtttgcaatacggataggctttccagctgaacatgtagaa 347  Q
    ||||||||||||||| |||||| | ||||||| ||||||||    
T  27403636 tgtttgcaatacggacaggcttccgagctgaaaatgtagaa 27403596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 27449691 - 27449600
Alignment:
Q  222 cattaccctgtgtgtatctgcattggcaagtcataggattgagcaacttccaaactttgcaagaagatgtagtcgataagattcttgtttgc 313  Q
    |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||| |||||||||||||||| |  ||||| ||||||||    
T  27449691 cattaccctgtgtgtagctgcattggcaagtcatgggattgagaaaattccaaacttagcaagaagatgtagtcaaccagatttttgtttgc 27449600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 31924434 - 31924477
Alignment:
Q  156 taataatttaagaaaatagaatgattgaatataataacatgtgt 199  Q
    |||||||||||||||||||||  |||||||||||| ||||||||    
T  31924434 taataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 9653522 - 9653551
Alignment:
Q  154 agtaataatttaagaaaatagaatgattga 183  Q
    ||||||||||||||||||||||||||||||    
T  9653522 agtaataatttaagaaaatagaatgattga 9653551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 184
Target Start/End: Original strand, 35722994 - 35723027
Alignment:
Q  151 actagtaataatttaagaaaatagaatgattgaa 184  Q
    |||||||||||||||||||||| |||||||||||    
T  35722994 actagtaataatttaagaaaatggaatgattgaa 35723027  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 43035976 - 43035932
Alignment:
Q  155 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 199  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  43035976 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 43035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 740883 - 740927
Alignment:
Q  155 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 199  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||||    
T  740883 gtaataatttaagaaaatataattattgaatgtaagaacatgtgt 740927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 8091464 - 8091420
Alignment:
Q  155 gtaataatttaagaaaatagaatgattgaatataataacatgtgt 199  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||    
T  8091464 gtaataatttaagaaaataggattattgaatgtaattacatgtgt 8091420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 26643336 - 26643300
Alignment:
Q  149 atactagtaataatttaagaaaatagaatgattgaat 185  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  26643336 atactggtaataatttaagaaaatagaataattgaat 26643300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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