View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11225_low_19 (Length: 356)

Name: NF11225_low_19
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11225_low_19
NF11225_low_19
[»] chr3 (7 HSPs)
chr3 (116-298)||(24678731-24678916)
chr3 (120-232)||(24684179-24684291)
chr3 (120-209)||(24655946-24656035)
chr3 (15-51)||(24678630-24678666)
chr3 (118-196)||(24692605-24692682)
chr3 (116-196)||(18158152-18158232)
chr3 (138-194)||(24714696-24714752)
[»] chr7 (1 HSPs)
chr7 (116-196)||(22014234-22014314)
[»] chr5 (1 HSPs)
chr5 (116-196)||(15282540-15282620)
[»] chr2 (1 HSPs)
chr2 (116-196)||(24224038-24224118)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 116 - 298
Target Start/End: Original strand, 24678731 - 24678916
Alignment:
Q  116 ttttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacaggatttctctacatttttag 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24678731 ttttacattgattttccatatataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacagaatttctctacatttttag 24678830  T
Q  216 tcaaagtaatcaaaattgacctgctgatcatgtcctatatggagctttttgccttaatgcctag----atagtcttaatactatttg 298  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  24678831 tcaaagtaatcaaaatttacctgctgat-atgtcctatatggagctttttgccttaatgcctagatatatagtcttaatactatttg 24678916  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 24684179 - 24684291
Alignment:
Q  120 acattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacaggatttctctacatttttagtcaa 219  Q
    |||||||||||||||| || ||||||| ||||||||||||||  |||| |||| ||||||||||||||| ||| ||| ||| || |||||  ||||  ||    
T  24684179 acattgattttccatatatcaataaactattgaaacatacacagcattctgctcaattaataaggaaaacaaagcagaattgctttacatgcttagagaa 24684278  T
Q  220 agtaatcaaaatt 232  Q
    |||||| ||||||    
T  24684279 agtaattaaaatt 24684291  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 24655946 - 24656035
Alignment:
Q  120 acattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacaggatttctctacat 209  Q
    |||||||||||||||| || ||||||| ||||||||||||||  | || |||| ||||||||||||||| ||| ||| ||| || |||||    
T  24655946 acattgattttccatatatcaataaactattgaaacatacacatcgttctgctcaattaataaggaaaacaaagcagaattgctttacat 24656035  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 24678630 - 24678666
Alignment:
Q  15 catcatatcaaggtagcttttttgttgagttaggctc 51  Q
    |||||||||||||||||||||||||||||||||||||    
T  24678630 catcatatcaaggtagcttttttgttgagttaggctc 24678666  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 24692605 - 24692682
Alignment:
Q  118 ttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacag 196  Q
    |||||||||||||||||| | | |||| ||||||||||| ||||  ||||  ||||||||||||||||||||| |||||    
T  24692605 ttacattgattttccatatacagataatccattgaaacagacacagcatt-cgctgaattaataaggaaaagacaacag 24692682  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 18158232 - 18158152
Alignment:
Q  116 ttttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacag 196  Q
    |||||||||||||||||| | |||||  ||| ||||||||||| ||   ||| |||| ||||||||||||||| |||||||    
T  18158232 ttttacattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacag 18158152  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 24714696 - 24714752
Alignment:
Q  138 taaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaac 194  Q
    ||||||||| ||||||||||||||  |||  |||| |||||| ||||||||||||||    
T  24714696 taaataaactattgaaacatacacagcatcctgctcaattaaaaaggaaaagaaaac 24714752  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 22014314 - 22014234
Alignment:
Q  116 ttttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacag 196  Q
    |||||||||||||||||| | |||||  ||| ||||||||||| ||   ||| |||| ||||||||||||||| |||||||    
T  22014314 ttttacattgattttccacatataaactaactattgaaacatatacagtattctgctcaattaataaggaaaacaaaacag 22014234  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 15282620 - 15282540
Alignment:
Q  116 ttttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacag 196  Q
    |||||||||||||||||| | |||||  ||| ||||||||||| ||   ||| |||| ||||||||||||||| |||||||    
T  15282620 ttttacattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacag 15282540  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 24224118 - 24224038
Alignment:
Q  116 ttttacattgattttccatacataaataaaccattgaaacatacactacattatgctgaattaataaggaaaagaaaacag 196  Q
    |||||||||||||||||| | |||||  ||| ||||||||||| ||   ||| |||| ||||||||||||||| |||||||    
T  24224118 ttttacattgattttccacatataaactaactattgaaacatatacattattctgctcaattaataaggaaaacaaaacag 24224038  T

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