View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11225_low_2 (Length: 832)

Name: NF11225_low_2
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11225_low_2
NF11225_low_2
[»] chr1 (2 HSPs)
chr1 (20-824)||(27656189-27656993)
chr1 (57-140)||(28351315-28351398)
[»] chr7 (7 HSPs)
chr7 (456-598)||(41309954-41310096)
chr7 (456-573)||(41324645-41324762)
chr7 (234-297)||(41309780-41309843)
chr7 (85-145)||(9895276-9895336)
chr7 (740-786)||(41310313-41310359)
chr7 (234-301)||(41324478-41324545)
chr7 (85-139)||(38652447-38652501)
[»] chr3 (5 HSPs)
chr3 (56-152)||(20532502-20532598)
chr3 (149-218)||(16983938-16984007)
chr3 (148-217)||(20532624-20532692)
chr3 (56-117)||(47844140-47844201)
chr3 (101-152)||(21014360-21014411)
[»] chr5 (1 HSPs)
chr5 (56-152)||(18148205-18148301)
[»] chr2 (5 HSPs)
chr2 (96-152)||(44472935-44472991)
chr2 (60-139)||(7708836-7708915)
chr2 (82-127)||(26317580-26317625)
chr2 (86-147)||(37444722-37444783)
chr2 (108-141)||(17765481-17765514)
[»] chr6 (6 HSPs)
chr6 (172-219)||(3731346-3731393)
chr6 (151-220)||(33184916-33184984)
chr6 (56-152)||(33185013-33185109)
chr6 (161-218)||(10919711-10919768)
chr6 (108-145)||(15959333-15959370)
chr6 (106-140)||(10587381-10587415)
[»] chr8 (2 HSPs)
chr8 (87-152)||(45439370-45439434)
chr8 (86-120)||(9594695-9594729)
[»] chr4 (1 HSPs)
chr4 (86-139)||(2187028-2187081)


Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 20 - 824
Target Start/End: Complemental strand, 27656993 - 27656189
Alignment:
20 taatcatgatgatggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
27656993 taatcatgatgatggtgaaacatagaggtaaaggtttttgtggtggctgaaagctagcaagattaattttgttttcagtactcatttgtggtggtcgagc 27656894  T
120 ccacttttatgtttgggcatcgactagctttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttgg 219  Q
    |||||||||| |||| | |||| ||||||||||||| |||| |||| |||| ||||||||||| |||||| | |||||||||||||||||||||||||||    
27656893 ccacttttatttttgaggatcggctagctttttcgtgattgttttggcacgtcttgtgctgagacgattgtgctgtcagtgttaatataattcattttgg 27656794  T
220 cctaatnnnnnnnngtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaatt 319  Q
    ||| ||        |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
27656793 cctgataaaaaaaagtttaccttgcaaaagtaaaccccagaagagaagctttaatgtcctaaaaattatcttcttcacagcaaccttaactttgggaatt 27656694  T
320 ctctgcattgttacttataggtcataatcaatggactatatagatatacatgaactagaatctagaaataatcatacaggaatgaggatatagctctttg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||    
27656693 ctctgcattgttacttataggtcataatcaatggactatatagatatacatgaactagaaactagaaacaatcatacaaaaatgaggatatagctctttg 27656594  T
420 ttaatcaagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatca 519  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27656593 ttaattaagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatca 27656494  T
520 gccaatgtacatccattccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtca 619  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
27656493 gccaatgtacatccattccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtca 27656394  T
620 attaatatcgattgtcagataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaa 719  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
27656393 attaatatcgattgtcagataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaa 27656294  T
720 agtatcttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcctttg 819  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||    
27656293 agcatcttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcctttg 27656194  T
820 ctact 824  Q
     ||||    
27656193 gtact 27656189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 28351398 - 28351315
Alignment:
57 ttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatc 140  Q
    ||||||||| |||||||||| ||   ||  ||| ||||| |||||| |||||||||||||||||||||| | ||||| ||||||    
28351398 ttgtggtggttgaaagctagtaacgctacctttattttcagtactcgtttgtggtggtcgagcccacttatgtgttttggcatc 28351315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 456 - 598
Target Start/End: Original strand, 41309954 - 41310096
Alignment:
456 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 555  Q
    ||||||||||||||||||||| || || ||||| |||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||     
41309954 tacctttaatgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatg 41310053  T
556 tgaggataagctccaccaccatcatccaccaatatcatcaact 598  Q
     | | ||||||||||||| |||| |||||||||||||||||||    
41310054 cgtgaataagctccaccagcatcgtccaccaatatcatcaact 41310096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 456 - 573
Target Start/End: Original strand, 41324645 - 41324762
Alignment:
456 tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt 555  Q
    ||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| || ||||||||||| |||||||||| ||| || |  ||||||||     
41324645 tacctttaatgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatg 41324744  T
556 tgaggataagctccacca 573  Q
     | |||||||||||||||    
41324745 cgtggataagctccacca 41324762  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 41309780 - 41309843
Alignment:
234 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcac 297  Q
    |||||||||||||||||| |||||| |||| |||||| |||||||| | |||||||||||||||    
41309780 gtttaccttgcaaaagtataccccaaaagagaagtttcaatgtcctgagaattatcttcttcac 41309843  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 9895336 - 9895276
Alignment:
85 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgacta 145  Q
    |||||||||| |||| || | |||||||| ||||||| |||||||||||||||||||||||    
9895336 attttgtttttggtattcgtatgtggtggacgagcccgcttttatgtttgggcatcgacta 9895276  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 786
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
740 actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc 786  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||    
41310313 actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc 41310359  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 41324478 - 41324545
Alignment:
234 gtttaccttgcaaaagtaaaccccagaagaaaagttttaatgtcctaaaaattatcttcttcacagca 301  Q
    ||||||||||||| |||| |||||| |||| ||| || ||||||||||  |||||||| |||||||||    
41324478 gtttaccttgcaatagtataccccaaaagagaagcttcaatgtcctaagtattatctttttcacagca 41324545  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 38652447 - 38652501
Alignment:
85 attttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 139  Q
    ||||| |||| || |||||| |||||||||||||||| ||| |||||||||||||    
38652447 attttatttttgggactcatatgtggtggtcgagcccgcttgtatgtttgggcat 38652501  T

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Target: chr3 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 20532502 - 20532598
Alignment:
56 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||||||||||||| || |||| |   ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||| |||||    
20532502 tttgtggtggctgaaagccagtaagactgcctttgttttcggcactcatttgtggtggtcgagcccacttatgtgtttgggcatcggctagattttt 20532598  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 16984007 - 16983938
Alignment:
149 ttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 218  Q
    ||||||| |||| |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
16984007 ttttcgtgattgttttggcacgccttgtgctgaagcgattgcactgtcagtgttaatataattcattttg 16983938  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 20532624 - 20532692
Alignment:
148 tttttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcatttt 217  Q
    |||||||| ||| ||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||    
20532624 tttttcgtgatttctttcgcacgccttgtactg-ggcgattgcgttgtcagtgttaatataattcatttt 20532692  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 47844140 - 47844201
Alignment:
56 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcga 117  Q
    |||||||||||| |||||||| |||   |||||| ||||||||| |||||||||||||||||    
47844140 tttgtggtggctaaaagctagaaaggccaattttattttcggtattcatttgtggtggtcga 47844201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 21014411 - 21014360
Alignment:
101 tcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||||||||| |||||||||| | ||||||||||||| ||| ||||||    
21014411 tcatttgtggtggttgagcccacttatgtgtttgggcatcgtctaacttttt 21014360  T

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Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 18148205 - 18148301
Alignment:
56 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||||| |||||||||| ||   ||  ||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||||||||    
18148205 tttgtggtggttgaaagctagtaacgctacctttgttttcggtactcatttgtggtggtcaagctcacttatgtgtttgggtatcggctagcttttt 18148301  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 44472991 - 44472935
Alignment:
96 ggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||    
44472991 ggtactcattcgtggtggtcgagccctcttttgtgtttgggcatcgactagtttttt 44472935  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 7708915 - 7708836
Alignment:
60 tggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 139  Q
    |||||||| |||||||  ||  ||||||||||||| |||| |||| |||||||||||||||| || || |||||||||||    
7708915 tggtggcttaaagctaagaaagttaattttgtttttggtattcatatgtggtggtcgagcccgctcttgtgtttgggcat 7708836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 26317580 - 26317625
Alignment:
82 ttaattttgttttcggtactcatttgtggtggtcgagcccactttt 127  Q
    ||||||||||||| | || |||||||||||||||||||||||||||    
26317580 ttaattttgtttttgctattcatttgtggtggtcgagcccactttt 26317625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 37444783 - 37444722
Alignment:
86 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagc 147  Q
    |||| |||| || ||||||||||| ||||||||||| || || |||||||||||||||||||    
37444783 ttttatttttggcactcatttgtgatggtcgagccccctgttgtgtttgggcatcgactagc 37444722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 17765481 - 17765514
Alignment:
108 tggtggtcgagcccacttttatgtttgggcatcg 141  Q
    |||||||||||||||||||||||| |||||||||    
17765481 tggtggtcgagcccacttttatgtatgggcatcg 17765514  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 3731393 - 3731346
Alignment:
172 cttgtgctgaggcgattgcgttgtcagtgttaatataattcattttgg 219  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||    
3731393 cttgtgctgaagcaattgcgttgtcagtgttaatataattcattttgg 3731346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 33184984 - 33184916
Alignment:
151 ttcgtaattgctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttggc 220  Q
    ||||| |||| |||| ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    
33184984 ttcgtgattgttttggcacgccttgtgctgaagcaattgcgatgtcagtgttaat-taattcattttggc 33184916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 33185109 - 33185013
Alignment:
56 tttgtggtggctgaaagctagcaagattaattttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||||| |||||||||| ||   ||  |||| |||| |||||||||| |||||||||||||||||| | ||| || ||||| |||||||||||    
33185109 tttgtggtggttgaaagctagtaatgctacatttgctttcagtactcatttttggtggtcgagcccacttatgtgtgtgtgcatcaactagcttttt 33185013  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 10919768 - 10919711
Alignment:
161 ctttgtcacgccttgtgctgaggcgattgcgttgtcagtgttaatataattcattttg 218  Q
    ||||| |||| |||||||||| |  ||| |||||||||||||||||||||||||||||    
10919768 ctttggcacgtcttgtgctgaagtaattacgttgtcagtgttaatataattcattttg 10919711  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 15959333 - 15959370
Alignment:
108 tggtggtcgagcccacttttatgtttgggcatcgacta 145  Q
    |||||||||||||||||||||||| |||||||||||||    
15959333 tggtggtcgagcccacttttatgtatgggcatcgacta 15959370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 10587381 - 10587415
Alignment:
106 tgtggtggtcgagcccacttttatgtttgggcatc 140  Q
    |||||||||||||||||||| ||||||||||||||    
10587381 tgtggtggtcgagcccacttgtatgtttgggcatc 10587415  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 45439370 - 45439434
Alignment:
87 tttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcatcgactagcttttt 152  Q
    |||||||| |||||||||| |||| |||||||||||||| | ||||||||||||| ||||||||||    
45439370 tttgtttttggtactcatt-gtggcggtcgagcccacttgtgtgtttgggcatcggctagcttttt 45439434  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 9594695 - 9594729
Alignment:
86 ttttgttttcggtactcatttgtggtggtcgagcc 120  Q
    |||||||||||| ||||||||||||||||||||||    
9594695 ttttgttttcggcactcatttgtggtggtcgagcc 9594729  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 2187081 - 2187028
Alignment:
86 ttttgttttcggtactcatttgtggtggtcgagcccacttttatgtttgggcat 139  Q
    ||||||||| || |||||| |||||||||||||||| ||| | |||||||||||    
2187081 ttttgtttttgggactcatatgtggtggtcgagcccgcttgtttgtttgggcat 2187028  T

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