View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_20 (Length: 349)
Name: NF11225_low_20
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 48861682 - 48861995
Alignment:
| Q |
1 |
tgaatattcttatcaaaagagacagtggttggtttggttcttggaggaaaaatgtcaaaagagatcaggtcagtggtggtagccatgtctttccatcttc |
100 |
Q |
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| T |
48861682 |
tgaatattcttatcaaaagagacagtggttggtttggttcttggaggaaaaatgtcaaaagagatcaggtcagtggtggtagccatgtctttccatcttc |
48861781 |
T |
|
| Q |
101 |
ttctactgataaggatactggtactattgacattgcagacaacaacaagattatgaaacgttctggtagctcttctagcctctcacatcatggcaagtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48861782 |
ttctactgataaggatactggtactattgacattgcagacaacaacaagattatgaaacgttctggtagctcttctagcctctcacatcatggcaagtcc |
48861881 |
T |
|
| Q |
201 |
cctacctgggtaagcttcaacccttttttcattcaaggtttcaactttctactagtgtttttgtgtttgtctccaaagttgtgacttttgtctcatggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48861882 |
cctacctgggtaagcttcaacccttttttcattcaaggtttcaactttctactagtttttttgtgtttgtctccaaagttgtgacttttgtctcatggaa |
48861981 |
T |
|
| Q |
301 |
ttgcatatgttata |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
48861982 |
ttgcatatgttata |
48861995 |
T |
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