View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_23 (Length: 310)
Name: NF11225_low_23
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 50898287 - 50898009
Alignment:
| Q |
19 |
cattctagtttttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaagcacttgcttctatgtagcttgtactgttattagattt |
118 |
Q |
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| T |
50898287 |
cattatagtttttatcttaaccaacttgttgaaattaacacttaaaatacctataaccccaagcacttgcttctatgtagcttgtactgttattagattt |
50898188 |
T |
|
| Q |
119 |
aattgccaaatcaagatccctgcagcaaaaattgctattatcactgaatatccatacaagaaactcttatttcaacttatccgtcactaaaaatacttac |
218 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50898187 |
aattgccaaatcaatatccctgcaacaaaaattgctattatcactgaatatccatacaagaagctcttatttcaacttatccgtcactaaaaatacttac |
50898088 |
T |
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| Q |
219 |
ataatattcataatgcaagaaaccaaactaaggttcaaattgaaagtaacattagttccaagtatcaaccatgctcttc |
297 |
Q |
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| T |
50898087 |
ataatattcataatgcaagaaaccaaactaaggttcaaattgaaagtaacattagttccaagtatcaaccatgctcttc |
50898009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 50902891 - 50902773
Alignment:
| Q |
185 |
ttatttcaacttatccgtcactaaaaatacttacataatattcataatgcaagaaaccaaactaaggttcaaattgaaagta-------acattagttcc |
277 |
Q |
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|||| |||||||||| | |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||| |||||| | ||||||||||| |
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| T |
50902891 |
ttatatcaacttatcagccactaaaattacttacataactttcattatgcaagaaaccaaactatggttcaaaatgaaagcaagataacacattagttcc |
50902792 |
T |
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| Q |
278 |
aagtatcaaccatgctctt |
296 |
Q |
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| T |
50902791 |
aagtatcaaccatgctctt |
50902773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 50904861 - 50904801
Alignment:
| Q |
19 |
cattctagtttttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaa |
80 |
Q |
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| T |
50904861 |
cattctagtctttatcttaaccaacttgttgaaattact-cttaaaatacctataaccccaa |
50904801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 38146627 - 38146511
Alignment:
| Q |
22 |
tctagtttttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaagcacttgcttctatgtagcttgtactgttattagatttaat |
121 |
Q |
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| T |
38146627 |
tctagtctttatctgaaccaacttgttaaaattacc-cttaaaatacctataaccccaaccagttgcttctatatagcttgtactattcttagagttaat |
38146529 |
T |
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| Q |
122 |
tgccaaatcaagatccct |
139 |
Q |
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| T |
38146528 |
tcccaaatcaagatccct |
38146511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 26028956 - 26029072
Alignment:
| Q |
22 |
tctagtttttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaagcacttgcttctatgtagcttgtactgttattagatttaat |
121 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| || || | |||| |
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| T |
26028956 |
tctagtctttatcttaaccaacttgttgaaattaccg-ttaaaatacctatatccccaaacacttgcttctatatagcttgtactattcttggggctaat |
26029054 |
T |
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| Q |
122 |
tgccaaatcaagatccct |
139 |
Q |
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| T |
26029055 |
ccccaaatcaagatccct |
26029072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 26039419 - 26039500
Alignment:
| Q |
22 |
tctagtttttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaagcacttgcttctatgtagcttgta |
104 |
Q |
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| T |
26039419 |
tctagtctttaccttaactaaccttttgaaatta-tccttaaaatacctatatcctcaaacacttgcttctgtgtagcttgta |
26039500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 40587308 - 40587369
Alignment:
| Q |
29 |
tttatcttaaccaacttgttgaaattaatacttaaaatacctataaccccaagcacttgcttc |
91 |
Q |
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| T |
40587308 |
tttatcttaatcaacttgttgaaatta-tccttaaaatacctatatccccaagcacatgcttc |
40587369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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