View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_26 (Length: 257)
Name: NF11225_low_26
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 31822703 - 31822777
Alignment:
| Q |
169 |
tcaagaaattaaaatcaatttctatttataaaaacattatcaagtctatcctaattatcccataattgatgtcca |
243 |
Q |
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| T |
31822703 |
tcaagaaattaaaatcaatttctatttataaaaacattatcaagtctatcctaattatcccataattgatgtcca |
31822777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 31822569 - 31822629
Alignment:
| Q |
18 |
aagtaactcgtataaggttacatcacaatctcatcaacccaagattcacaagaaacgagtc |
78 |
Q |
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| T |
31822569 |
aagtaactcgtataaggttacatcacaatctcatcaacccaagattcacaagaaacgagtc |
31822629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 31822671 - 31822707
Alignment:
| Q |
120 |
ttttttgaaggttctaacaagaattcaaataatcaag |
156 |
Q |
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| T |
31822671 |
ttttttgaaggttctaacaagaattcaaataatcaag |
31822707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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