View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_27 (Length: 246)
Name: NF11225_low_27
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 27499524 - 27499730
Alignment:
| Q |
18 |
aaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggatatcaact |
117 |
Q |
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| T |
27499524 |
aaaacaccttgaaatttttttgtggcaatccaaaatccttgatattgataggtgtgggttaaaatccaggctttttctgatggcaaggtgggtatcaact |
27499623 |
T |
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| Q |
118 |
ccttgcattcttggtttaagtcatcatcctgcaagtatttggctacaagagagttttcatcacttgattttatcatggttgtgggtagtcaaggctaaat |
217 |
Q |
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| T |
27499624 |
ccttgcattcttggcttaagtcatcatcttgcaagtatttggctacaaaagagttttcatcacttgattttaccatggttatgggtagtcaaagcttaat |
27499723 |
T |
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| Q |
218 |
atagaaa |
224 |
Q |
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|| |||| |
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| T |
27499724 |
attgaaa |
27499730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 27544091 - 27544041
Alignment:
| Q |
80 |
aatccatgctttttctgatggcaaagtggatatcaactccttgcattcttg |
130 |
Q |
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| T |
27544091 |
aatccatcctttttctaatggcaatgtggatatcaactccttgcattcttg |
27544041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 11439554 - 11439716
Alignment:
| Q |
18 |
aaaacaccttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggatatcaact |
117 |
Q |
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| T |
11439554 |
aaaacaccttgaagaattctcgtgccaatccaaaatccttgatattgatgaaagtgggtactgatccatcctttttctaatggtaaggtttgtattaact |
11439653 |
T |
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| Q |
118 |
ccttgcattcttggtttaagtcatcatcctgcaagtatttggctacaagagagttttcatcac |
180 |
Q |
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| T |
11439654 |
ccttgcattctttgcctaactcatcttcttgcaagtattttggcacaagagagttttcatcac |
11439716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 11317983 - 11318091
Alignment:
| Q |
23 |
accttggagaatttttgtggcaatccaaaatccttgatattgatgggtgtgggttaaaatccatgctttttctgatggcaaagtggatatcaactccttg |
122 |
Q |
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|||||||||||| |||||| || |||||||||||||||||||||| ||||| | |||||| |||||||| ||||||| |||| |||||||||||| |
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| T |
11317983 |
accttggagaatccttgtggtaagccaaaatccttgatattgatggaagtgggatgtaatccaacctttttctaatggcaaggtgggtatcaactcctta |
11318082 |
T |
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| Q |
123 |
cattcttgg |
131 |
Q |
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||||||||| |
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| T |
11318083 |
cattcttgg |
11318091 |
T |
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