View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11225_low_28 (Length: 246)
Name: NF11225_low_28
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 28088416 - 28088183
Alignment:
| Q |
1 |
tcctgaatatataatcgtttcatgtcttccgcagaacccaaaccagtgccgaattgaccaataactccttctaagcttccacaactgagcctcctctata |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28088416 |
tcctgaatatatgatcgtttcatgccttccgaagaacccaaaccagtgccgaattaaccaataactccttctaagcttctacaactgagcctcctctata |
28088317 |
T |
|
| Q |
101 |
aaacattccaaatgtacaaaaaggttcgatggagtaataaaaccaataccaagccatctaaacaccaacgaccacactcttaagggccctttctcagaac |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28088316 |
aaacattccaaatgtagaaaaaagtttgatggagtaataaaaccaataccaagccatctaaacactaacgaccacactcttaagggccctttctcagaac |
28088217 |
T |
|
| Q |
201 |
agaaacaacccatctaaatactcttcttcattca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28088216 |
agaaacaacccatctaaatactcttcttcattca |
28088183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 234
Target Start/End: Original strand, 28105194 - 28105396
Alignment:
| Q |
35 |
aacccaaaccagtgccgaattgaccaataactccttctaagcttccacaactgagcctcctctataaaacattccaaatgtacaaaaa---ggttcgatg |
131 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||| |||| | || ||| ||| ||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
28105194 |
aacccaaaccagtgccaaattaaccaataaccccttctaaacttcttcgaccgagactctcctataaaacattccaaatgtacaaaaaaaaggtttgatg |
28105293 |
T |
|
| Q |
132 |
gagtaataaaa-ccaataccaagccatctaaacaccaacgaccacactcttaagggccctttctcagaacagaaacaacccatctaaatactcttcttca |
230 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28105294 |
gagtaataaaaaccaataccaacccatctaaacaccaacggccacactct-aagggccctttctcagaacagaaacaacccatctaaatactcatcttca |
28105392 |
T |
|
| Q |
231 |
ttca |
234 |
Q |
| |
|
|||| |
|
|
| T |
28105393 |
ttca |
28105396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University