View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_30 (Length: 229)
Name: NF11225_low_30
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8718347 - 8718572
Alignment:
| Q |
1 |
aacaacaaacaagaggagggtgcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggca |
100 |
Q |
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| T |
8718347 |
aacaacaaacaagaggagggggcctaatccaagtctgcttttgatggaaaacacgtcgtgaaaatatcgtgggattccaattcccgttatttagctggca |
8718446 |
T |
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| Q |
101 |
tttgtggattggtactggcctaatccaagtatgcatttcgaagaataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattg |
200 |
Q |
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| T |
8718447 |
tttgtggattgg---tggcctaatccaagtctgcatttcgacgaataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattg |
8718543 |
T |
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| Q |
201 |
ataatattctataaggacgtatggagttt |
229 |
Q |
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| T |
8718544 |
ataatattctataaggacatatggagttt |
8718572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 8672078 - 8672260
Alignment:
| Q |
44 |
atggaaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagctggcatttgtggattggtactggcctaatccaagtatgcatttcgaag |
143 |
Q |
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| T |
8672078 |
atgggaaacacgtcgtgaaaatatcgtgggattccaattcgcgttatttagcctgcatttaaggattggt---ggcctaatcctagtctgcatttcgacg |
8672174 |
T |
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| Q |
144 |
aataagtgttggctgttgttgtggaatttgtgttggcatttttatttgttgtcattgataatattctataaggacgtatggagttt |
229 |
Q |
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| T |
8672175 |
aataagtgttagctgttgttgtggaatttgtgttggcatttttatttgttgtcgttgacaatattctataaggacatatggagttt |
8672260 |
T |
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