View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_5 (Length: 515)
Name: NF11225_low_5
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 8719124 - 8718639
Alignment:
| Q |
18 |
accagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8719124 |
accagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaata |
8719025 |
T |
|
| Q |
118 |
ttccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttat |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719024 |
ttcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttat |
8718926 |
T |
|
| Q |
218 |
ttacgaaacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgct |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8718925 |
ttatgaaacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgct |
8718826 |
T |
|
| Q |
318 |
tcaatcaagctgattcatttttccatgacatagctgctgctgtttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8718825 |
tcaatcaagctgattcatttttccatgacatagctgctgctgtttttatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattat |
8718726 |
T |
|
| Q |
418 |
tggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcat |
504 |
Q |
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| T |
8718725 |
tggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttcat |
8718639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 8672825 - 8672327
Alignment:
| Q |
18 |
accagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaata |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8672825 |
accagaaaatgtggatatatgcatgcttttaactg--gagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaata |
8672728 |
T |
|
| Q |
118 |
ttccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttat |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| | ||| |
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| T |
8672727 |
ttcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagataactttgctttatttttggggttaa |
8672629 |
T |
|
| Q |
218 |
ttacga------------aacaggtaaaaaa-gatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactag |
304 |
Q |
| |
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|| ||| ||||| ||||||| |||||||||||||| |||||| | |||||||||||| |||||||||||||||| |||||||||| ||| |
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| T |
8672628 |
ttgcgatatttttcatgaaacagataaaaaaagatgataatccatgttgttgatctagttgttcaagatttggaagctttcattaaatgctcatcattag |
8672529 |
T |
|
| Q |
305 |
gctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgtttttat--cgtcagaacatgatagttctaatttatttggagtga |
402 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8672528 |
actaaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgtttttatatcgtcagaacatgatagttctaatttatttggagtga |
8672429 |
T |
|
| Q |
403 |
aaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttc |
502 |
Q |
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| T |
8672428 |
aaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgtattttcttttttacacacattatttatttc |
8672329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 8591286 - 8591082
Alignment:
| Q |
18 |
accagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaata |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8591286 |
accagaaaatgtggatatctgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaata |
8591187 |
T |
|
| Q |
118 |
ttccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaac---tttgcttaatatttgtgtt |
214 |
Q |
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| T |
8591186 |
at-cctttttgccttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtggacaactaatttgctttgtttttgtgtt |
8591088 |
T |
|
| Q |
215 |
tattta |
220 |
Q |
| |
|
|||||| |
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|
| T |
8591087 |
tattta |
8591082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 8591052 - 8590983
Alignment:
| Q |
224 |
aacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatg |
293 |
Q |
| |
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||||| ||||||| ||||||||| |||||| ||||||||||||| |||| ||||||||||||||| |||| |
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| T |
8591052 |
aacagttaaaaaatatgataatctatgctgctgaccaagttgttgaagaattggaagctttcattggatg |
8590983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 8590909 - 8590843
Alignment:
| Q |
404 |
aaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgta |
473 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||||| |||| |
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| T |
8590909 |
aaatagagggttattggtatcattattag---acatttattctcttgttattaagtcaaatatttctgta |
8590843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 8590958 - 8590925
Alignment:
| Q |
373 |
aacatgatagttctaatttatttggagtgaaaaa |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
8590958 |
aacatgatagttctaatttatttggagtgaaaaa |
8590925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 23439993 - 23440104
Alignment:
| Q |
222 |
gaaacaggtaaaaaagatgataatccatgctgttgaccaagttgttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaa |
321 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||| ||||||| || |
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| T |
23439993 |
gaaacaggtaaaaaagatgataatccatgttgttgaccaagttgttcaagattttgaagctttcattagatgctcatcactggactgaaagttgctttaa |
23440092 |
T |
|
| Q |
322 |
tcaagctgattc |
333 |
Q |
| |
|
||||| |||||| |
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| T |
23440093 |
tcaagttgattc |
23440104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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