View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11225_low_7 (Length: 465)
Name: NF11225_low_7
Description: NF11225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11225_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 41 - 454
Target Start/End: Complemental strand, 29024208 - 29023807
Alignment:
| Q |
41 |
aaataaagcaaacttttgtgttatatattcatctagattttaattcacattgtttgtatcttacatgcatatctactttcttaacccattggctcttcta |
140 |
Q |
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| T |
29024208 |
aaataaagcaaacttttgtgttatatattgatctagattttaattcacattgtttgtatcttacatgcatatctactctttttttc---tgtctcttcta |
29024112 |
T |
|
| Q |
141 |
gacactttctaaaggtaaggtcctcaattatatatagtttcattacattacattagttcttaaacttataaatttggctacaaattaaacttcaatttcc |
240 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29024111 |
gacactttcttaaggtaaggtcctcaattatatatagtttcattacatta-----gttcttaaacttataaatttggctac----taaacttcaatttcc |
29024021 |
T |
|
| Q |
241 |
aaaaaatagtgtccannnnnnnnaagcatggaaaatgaccaaattacaagcaaggaaatgaaagtggagattcaatcaagaagtgaagttatgtcaagta |
340 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29024020 |
aaaaaatagtgtccattttttttaagcatggaaaatgaacaaattacaagcaaggaaatgaaagtggagattcaatcaaggagtgaagttatgtcaagta |
29023921 |
T |
|
| Q |
341 |
ctataggggtagaggtacaaggaggttcaaatatgggacaaggtggacttatgagacaacctagtatgactaaaacaaattgtctatgttcaccaacaac |
440 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29023920 |
ctataggggtagaggtacaagggggttcaaatatgggacaaggtggacttatgagacaacctagtatgaccaaaacaaattgtctatgttcaccaacaac |
29023821 |
T |
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| Q |
441 |
acatcctggttcat |
454 |
Q |
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|||||||||||||| |
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| T |
29023820 |
acatcctggttcat |
29023807 |
T |
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