View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_high_1 (Length: 802)
Name: NF11226_high_1
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 489 - 798
Target Start/End: Complemental strand, 4681713 - 4681390
Alignment:
| Q |
489 |
tctgatttgcttaagaatatttttgggtttgtttaagagttaacccgcatatgtccgtccgatttacccgaaacccgattgacctgaacccgctcaaccc |
588 |
Q |
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| T |
4681713 |
tctgatttgcttaagaatttttttaggtttgttcaagagttaacccgcatatgtccgcccaatttacccgcaacccgattgacccgaacccgctcaaccc |
4681614 |
T |
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| Q |
589 |
gtgtatgtgtgaatgggaatgacactaat---accaaccaacctatactatacaatactataattttgagagcatttacgaggcagcagcagcccaatga |
685 |
Q |
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| T |
4681613 |
gtgtatgtgtgaatgggaatgacactaataccaccaaccaacctatactatactatactataattttgagagcatttacgaggcagcagcagcccaatga |
4681514 |
T |
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| Q |
686 |
cgtcaat------aaaaaatcgagtataataataataat---accacgcatattgaa--atcaaaacgagaggaccaaacataaacactccctctcttct |
774 |
Q |
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| T |
4681513 |
cgtcaataaaataaaaaaatggagtataataataataataacaccacgcatactgaaatatcaaaacgagaggaccaaacataaacactccctctcttct |
4681414 |
T |
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| Q |
775 |
tcccattggtgtttcatctcactc |
798 |
Q |
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| T |
4681413 |
tcccattggtgtttcatttcactc |
4681390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 4682212 - 4681916
Alignment:
| Q |
18 |
attagaataaaaatagttcatggaaatgtaattattaaaatgggattttggtatatctatgttgaactatctttactttt-caaattagatgattactaa |
116 |
Q |
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| T |
4682212 |
attagaataaaaatagttcatggaaatgtaattattaaaatgg-attttgatatatctatgttgaactatctttactttttcaaattagatgatt----- |
4682119 |
T |
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| Q |
117 |
agggttataacatttcagtatattgttggccgcatttgtaaatttaactcatcgaaaaacaaaacacatatttggttattagatcaagcggtctatattt |
216 |
Q |
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| T |
4682118 |
-------------ttcagtataatgttggccgcatttgtaaatttaactcattgaaaaacaaaa-acatctttggttattaaatcaagcggtctatattt |
4682033 |
T |
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| Q |
217 |
caaacttgatannnnnnnctaaaataaatttaaaataacattaaaatatagaacgttcaatc-ttgacttaacgatcatagatgtgtgacaatctttgaa |
315 |
Q |
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| T |
4682032 |
caaacttgatatttttttctaaaacaaatttaaaataacattaaaatatagaacgttcaatctttgacttaacgattgtagatgtgtgacaatctttgaa |
4681933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 4681816 - 4681750
Alignment:
| Q |
339 |
gttttatggctcttgatctctttcccttgccttgctgctgtgtaaacaagaagacaaccatgcaaca |
405 |
Q |
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| T |
4681816 |
gttttatggctcttgatctctttcccttgccttgctgctgtgtaaacaagaagacaaccatgcaaca |
4681750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 407 - 605
Target Start/End: Complemental strand, 21429774 - 21429567
Alignment:
| Q |
407 |
ctttctcctctttcttcttcattatctttcnnnnnnnncttagatctcagtttagtgtgttcttgtttttctgttt------------tatgaatctgat |
494 |
Q |
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| T |
21429774 |
ctttctcctccttcttcttcattatctttcttttt---cttagatctcagtttggtgtgttcttgtttttctgtttgatgagtattattatgaatctgat |
21429678 |
T |
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| Q |
495 |
ttgcttaagaatatttttgggtttgtttaagagttaacccgcatatgtccgtccgatttacccgaaacccgattgacctgaacccgctcaacccgtgtat |
594 |
Q |
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| T |
21429677 |
ttgcttaagaatttttttgggtttgttcaagagttaacccgcatatgtccgcccgatttacccgcagcccgattgacccgaacccgctcaacccgtgtat |
21429578 |
T |
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| Q |
595 |
gtgtgaatggg |
605 |
Q |
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| T |
21429577 |
gtgtgaatggg |
21429567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 339 - 405
Target Start/End: Complemental strand, 21429876 - 21429810
Alignment:
| Q |
339 |
gttttatggctcttgatctctttcccttgccttgctgctgtgtaaacaagaagacaaccatgcaaca |
405 |
Q |
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| T |
21429876 |
gttttatggctcttgatctttttcccttgccttgttgttgtgtaaacaagaagacaaccatgcaaca |
21429810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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