View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_high_12 (Length: 332)
Name: NF11226_high_12
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 324
Target Start/End: Original strand, 10561477 - 10561780
Alignment:
| Q |
21 |
aacaggagtaacaggaagtcagattctatatttcatagggctaaaatattcaacccctataattgcatgtgcactcaccaatttggacacagcttttaca |
120 |
Q |
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| T |
10561477 |
aacaggagtaacaggaagtcagattctgtatttcatagggctaaaatattcaaccccgataatcgcatgtgcgctcaccaatttggacacagcttttacc |
10561576 |
T |
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| Q |
121 |
tttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaagagtggtgtagcaaaggtggtagggacagttctatgtattggtggagcgg |
220 |
Q |
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| T |
10561577 |
tttgttcttgcaattctcttcagacaagagaatttgggaataaagaagaagagtggcgtagcaaaggtggtagggacagttctatgtattggtggagcgg |
10561676 |
T |
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| Q |
221 |
tagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggaattatgcagagaaacttgaacatggtcatcttaacttctc |
320 |
Q |
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| T |
10561677 |
tagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggagttatgcagagaaacttgaacatggtcatcttaacttctc |
10561776 |
T |
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| Q |
321 |
tgct |
324 |
Q |
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|||| |
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| T |
10561777 |
tgct |
10561780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 45936245 - 45936395
Alignment:
| Q |
142 |
agacaagagaatttgggaataaagaagaagagtggtgtagcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacg |
241 |
Q |
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| T |
45936245 |
agacaagagaatttgggaataaagaagaaaagtggtatagcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatg |
45936344 |
T |
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| Q |
242 |
caaaagtaattgatgtacctgaatcaagggttcattggaattatgcagaga |
292 |
Q |
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| T |
45936345 |
gacaagtaattggtataccagaatcaaaaattcattggagttatgctgaga |
45936395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 45936059 - 45936144
Alignment:
| Q |
58 |
gggctaaaatattcaacccctataattgcatgtgcactcaccaatttggacacagcttttacatttgttcttgcaattctcttcag |
143 |
Q |
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| T |
45936059 |
gggctaaaatacacaaccgcaacaattgcatgtgccctaaccaatttgcttccagcttttacatttgtcctagcaatcctcttcag |
45936144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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