View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11226_high_14 (Length: 252)

Name: NF11226_high_14
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11226_high_14
NF11226_high_14
[»] chr7 (2 HSPs)
chr7 (89-233)||(3417327-3417471)
chr7 (1-44)||(3417516-3417559)
[»] chr2 (3 HSPs)
chr2 (92-234)||(13440438-13440580)
chr2 (92-232)||(13448601-13448741)
chr2 (92-207)||(13455072-13455187)
[»] chr5 (4 HSPs)
chr5 (92-233)||(28385572-28385713)
chr5 (92-224)||(12540923-12541055)
chr5 (1-35)||(28385481-28385515)
chr5 (1-37)||(12540832-12540868)
[»] scaffold0536 (2 HSPs)
scaffold0536 (92-204)||(6337-6449)
scaffold0536 (122-225)||(1270-1373)
[»] chr4 (4 HSPs)
chr4 (94-203)||(48974349-48974458)
chr4 (92-204)||(48958385-48958497)
chr4 (92-229)||(48912146-48912283)
chr4 (112-158)||(48965587-48965633)
[»] chr6 (3 HSPs)
chr6 (92-227)||(12483267-12483402)
chr6 (96-230)||(12589969-12590103)
chr6 (12-44)||(12483450-12483482)
[»] chr8 (1 HSPs)
chr8 (123-226)||(12641285-12641388)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 3417471 - 3417327
Alignment:
Q  89 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 188  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  189 gtacaacactgagttaacttgttgtgagttgagccaactcaggca 233  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  3417371 gtacaacactgagttaacttgttgtgagttgagccaacgcaggca 3417327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3417559 - 3417516
Alignment:
Q  1 cccttctttccaatgtttctctcctcaaatcccttcgacaacca 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  3417559 cccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 13440438 - 13440580
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  192 caacactgagttaacttgttgtgagttgagccaactcaggcat 234  Q
    |||||| ||||||||||  | ||||| ||||||||||| ||||    
T  13440538 caacaccgagttaactttctctgagtcgagccaactcatgcat 13440580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 232
Target Start/End: Original strand, 13448601 - 13448741
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  192 caacactgagttaacttgttgtgagttgagccaactcaggc 232  Q
    ||||||||||||||||   | ||| | ||||||||||||||    
T  13448701 caacactgagttaactctctctgaatcgagccaactcaggc 13448741  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 13455072 - 13455187
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  192 caacactgagttaact 207  Q
    ||| ||||||||||||    
T  13455172 caatactgagttaact 13455187  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 28385572 - 28385713
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  192 caacactgagttaacttgttgtgagttgagccaactcaggca 233  Q
    ||  |||||||||||| | ||||| ||||||||  |||||||    
T  28385672 cacaactgagttaactcgctgtgatttgagccagttcaggca 28385713  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 12540923 - 12541055
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  192 caacactgagttaacttgttgtgagttgagcca 224  Q
    || ||||||||||||||| ||||||||||||||    
T  12541023 caccactgagttaacttgctgtgagttgagcca 12541055  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 28385481 - 28385515
Alignment:
Q  1 cccttctttccaatgtttctctcctcaaatccctt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  28385481 cccttctttccaatgtttctctcctcaaatccctt 28385515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12540832 - 12540868
Alignment:
Q  1 cccttctttccaatgtttctctcctcaaatcccttcg 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  12540832 cccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

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Target: scaffold0536 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 6449 - 6337
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  192 caacactgagtta 204  Q
    |||||||||||||    
T  6349 caacactgagtta 6337  T

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Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 1373 - 1270
Alignment:
Q  122 cttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgag 221  Q
    |||||| ||| | |||||||||||| | ||||||||||| |||||||   ||| ||||||| |||||||| |  ||||||||| || | | |||||||||    
T  1373 cttctagtgcacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgag 1274  T
Q  222 ccaa 225  Q
    ||||    
T  1273 ccaa 1270  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 48974349 - 48974458
Alignment:
Q  94 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 193  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  194 acactgagtt 203  Q
     |||||||||    
T  48974449 gcactgagtt 48974458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 48958385 - 48958497
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  192 caacactgagtta 204  Q
    |||||||||||||    
T  48958485 caacactgagtta 48958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 48912283 - 48912146
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| ||||||||||| || ||||       ||||||||| ||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgta 48912184  T
Q  192 caacactgagttaacttgttgtgagttgagccaactca 229  Q
    || ||| |||||| ||||||  ||||| ||||||||||    
T  48912183 caccaccgagttatcttgtttcgagttaagccaactca 48912146  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  112 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 158  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 12483402 - 12483267
Alignment:
Q  92 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 191  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  192 caacactgagttaacttgttgtgagttgagccaact 227  Q
    ||||||||| ||  |||| | |||||| ||||||||    
T  12483302 caacactgaattttcttgctttgagtttagccaact 12483267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 230
Target Start/End: Complemental strand, 12590103 - 12589969
Alignment:
Q  96 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 195  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  196 actgagttaacttgttgtgagttgagccaactcag 230  Q
    || |||||| || | |  ||||| |||||||||||    
T  12590003 acagagttatctcgcttcgagtttagccaactcag 12589969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  12 aatgtttctctcctcaaatcccttcgacaacca 44  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 12641388 - 12641285
Alignment:
Q  123 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagc 222  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| |||||||| ||| |||| | ||| ||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagc 12641289  T
Q  223 caac 226  Q
    ||||    
T  12641288 caac 12641285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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