View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_high_16 (Length: 235)
Name: NF11226_high_16
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 41081801 - 41081642
Alignment:
| Q |
66 |
ttgtttttaatttaggtaaacaaaatacttactcgaattctttttacaagaaataaaagattaatcattaagaaaatgctttgcaatgtgttaattttat |
165 |
Q |
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| T |
41081801 |
ttgtttttaatttaggtaaacaaaatacttactcgaattttttttacaagaaataaaagattaatcattaagaaaatgctttgcaatgtgttaattttat |
41081702 |
T |
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| Q |
166 |
ataattgtgatataatttaaaatttattccaacaataatctttgatctcctttcatctca |
225 |
Q |
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| T |
41081701 |
ataattgtgatataatttaaaatttattccaacaataatctttgatctcctttcatctca |
41081642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 41083387 - 41083331
Alignment:
| Q |
18 |
tcaatgcttacacttgatggtcatcgaattgtggttttcttttactatttgttttta |
74 |
Q |
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| T |
41083387 |
tcaatgcttacacttgacggtcatcgaattgtggttttcttttactatttgttttta |
41083331 |
T |
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