View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_high_6 (Length: 485)
Name: NF11226_high_6
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 7476745 - 7477198
Alignment:
| Q |
12 |
aagaagcatgggacattattccttcaccttaaatattttttattttnnnnnnnnggtatgcatgtttttattagaggacatgtaattgacacatcaacta |
111 |
Q |
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| T |
7476745 |
aagatgcatgggacattattccttcaccttaaatatttt--attttaaaaaaa-ggtatgcatgtttttattagaggacatgtaattgacacatcaacta |
7476841 |
T |
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| Q |
112 |
ataatgaatgcaagaattgccgcgttgccattaaagaattcaagaaataaaatatggtgtcgaataagatcaacacatgcatgttat-aaactctaatgg |
210 |
Q |
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| T |
7476842 |
ataatgaatgcaagaattgccgcgttgccattaaagaattcaagaaataaaatatggtgtcgaataagatcaacacatgcatgttataaaactctaatgg |
7476941 |
T |
|
| Q |
211 |
cagcatataatattcccaaatgatcgtaacagtgatagagatgccaaagtctaatatgacataagatcatttgtttttatcaataagtattaattaatta |
310 |
Q |
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| T |
7476942 |
cagcatataatattcccaaatgatcgtaacagtgatagagatgccaaagtctaatatgacataagatcatttgtttttatcaataagtattaattaatta |
7477041 |
T |
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| Q |
311 |
gttagagaataatgtcagtttttagagtttaaactatgaacttatcactctctcnnnnnnnnnnnnnnnttatgaacttatcatttaaaaactctacaat |
410 |
Q |
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| T |
7477042 |
gttagag-ataatgttagtttttagagtttaaactatgaacttatcactctctc-aaaaaaacaaaaaattatgaacttatcatttaaaaactctacaat |
7477139 |
T |
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| Q |
411 |
attctttacttttccctgaaaaaacttctctactttatcaacggattatcatcgttact |
469 |
Q |
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| T |
7477140 |
attctttacttttccctgaaaaaacttctctactttatcaacggattatcatcgttact |
7477198 |
T |
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