View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_low_13 (Length: 292)
Name: NF11226_low_13
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_low_13 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 42835073 - 42835330
Alignment:
| Q |
1 |
aggaagcagcttaaattccttattagatggattccacaatataatattttcttgagatgcacatagcaaacagatagttccatgaacactaccagaacca |
100 |
Q |
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| T |
42835073 |
aggaagcagcttaaattccttattagatggattccacaatataatattttcttgagatgcacatagcaaacagatagttccatgaacactgccagaacca |
42835172 |
T |
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| Q |
101 |
ataatattaaaaccggaaccatactcttctttatgcagatatattggatctaacttgacacttggccaatctaagttgacccttttctcaaacctctcac |
200 |
Q |
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| T |
42835173 |
ataatattaaaaccggaatcatactcttctttatgcagatatatcggatctaacttgacacttggccaatctaagttgacccttttctcaaacctctcac |
42835272 |
T |
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| Q |
201 |
cagaaagagtttgcaactggtatggttcttgtaaataagtatgaaaagtttgatgtag |
258 |
Q |
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| T |
42835273 |
cagaaagagtttgcaactggtatggttcttgtaaataagtatgaaaagtttgatgtag |
42835330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 16487250 - 16487450
Alignment:
| Q |
9 |
gcttaaattccttattagatggattccacaatataatattttcttgagatgcacatagcaaacagatagttccatgaacactaccagaaccaataatatt |
108 |
Q |
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| T |
16487250 |
gcttaaattccatagtagatggattccacaataaaatattcacatgggatgcacaaaacagacacagagttccaagaacgctgccagatcctaatatatt |
16487349 |
T |
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| Q |
109 |
aaaaccggaaccatactcttctttatgcagatatattggatctaacttgacacttggccaatctaagttgacccttttctcaaacctctcaccagaaaga |
208 |
Q |
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| T |
16487350 |
aaaaccagaatcatactccgtttgatcccgatatataggatctaatttgacacttggccaatctaatttgatcctattctcaaacctcttaccagcaaga |
16487449 |
T |
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| Q |
209 |
g |
209 |
Q |
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| T |
16487450 |
g |
16487450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 42777506 - 42777391
Alignment:
| Q |
8 |
agcttaaattccttattagatggattccacaatataatattttcttgagatgcacatagcaaacagatagttccatgaacactaccagaaccaataatat |
107 |
Q |
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| T |
42777506 |
agcttgaattctttagtagatgggttccacaatataatattttctttatatgcacaaaccagacaaagaattccatgaacactaccagaacctaaaatat |
42777407 |
T |
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| Q |
108 |
taaaaccggaaccata |
123 |
Q |
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| T |
42777406 |
caaaaccagaaacata |
42777391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 16972 - 17013
Alignment:
| Q |
168 |
aatctaagttgacccttttctcaaacctctcaccagaaagag |
209 |
Q |
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| T |
16972 |
aatctaatttgaccttattctcaaacctctcaccagaaagag |
17013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48742657 - 48742701
Alignment:
| Q |
163 |
tggccaatctaagttgacccttttctcaaacctctcaccagaaag |
207 |
Q |
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| T |
48742657 |
tggccaatctaatttgaccttattctcaaacgtctcaccagaaag |
48742701 |
T |
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