View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11226_low_15 (Length: 238)

Name: NF11226_low_15
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11226_low_15
NF11226_low_15
[»] chr4 (1 HSPs)
chr4 (1-224)||(44549886-44550108)
[»] chr8 (1 HSPs)
chr8 (28-189)||(38432675-38432828)
[»] chr2 (2 HSPs)
chr2 (31-198)||(42795853-42796009)
chr2 (24-98)||(19906409-19906481)
[»] chr7 (2 HSPs)
chr7 (146-217)||(13471184-13471255)
chr7 (114-189)||(13471376-13471451)
[»] chr5 (1 HSPs)
chr5 (136-191)||(39263673-39263728)
[»] chr3 (1 HSPs)
chr3 (138-192)||(31180714-31180769)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44549886 - 44550108
Alignment:
Q  1 aaggaacagaggtagtatatttgaatatcaacaacttctaccttatttaatgctactattcttaaattactccttcaattagtgtcgattttatttttca 100  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  44549886 aaggaacggaggtagtatatttgaatatcaacaacttctatcttatttaatgctactgttcttaaattactccttcaattagtgtcgattttatttttct 44549985  T
Q  101 ataagtatttttatcacggaacaagttcttatgcggggtaatttgaaaattacaattgtatattttataattttgagagaattaaatgacactaactatt 200  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44549986 gtaagtatttt-atcacggaacaagttcttatgcggggtaatttgaaaattactattgtatattttataattttgagagaattaaatgacactaactatt 44550084  T
Q  201 ttattaaaagggtgtgaattttgt 224  Q
    ||||||||||||||||||||||||    
T  44550085 ttattaaaagggtgtgaattttgt 44550108  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 38432675 - 38432828
Alignment:
Q  28 tcaacaacttctaccttatttaatgctactattcttaaattactccttcaattagtgtcgattttatttttcaataagtatttttatcacggaacaagtt 127  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||      | | || || ||||| ||||||||    
T  38432675 tcaactacttctatcttattcaatgctactattcttaaattac-ccttcaattaatgt-gattttatttt------atttttcttctcacgaaacaagtt 38432766  T
Q  128 cttatgcggggtaatttgaaaattacaattgtatattttataattttgagagaattaaatga 189  Q
    |  ||| ||||||||||  |||||||||||||||  ||||||| |||||| ||| |||||||    
T  38432767 cccatgaggggtaatttagaaattacaattgtattctttataactttgagggaaataaatga 38432828  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 42795853 - 42796009
Alignment:
Q  31 acaacttctaccttatttaatgctactattcttaaattactccttcaattagtgtcgattttatttttcaataagtatttttatcacggaacaagttctt 130  Q
    |||||||||| | ||||||||| |||||||| ||||||| ||||| ||||| ||| ||||||||||||         || || ||| ||||||||||||     
T  42795853 acaacttctatcatatttaatgttactattcctaaatta-tcctttaattaatgt-gattttattttt---------ttcttttcatggaacaagttctc 42795941  T
Q  131 atgcggggtaatttgaaaattacaattgtatattttataattttgagagaattaaatgacactaacta 198  Q
    |||   | ||||||  ||||||||||||||| ||||||||||||||||||| |||||||||| |||||    
T  42795942 atggatgataatttagaaattacaattgtattttttataattttgagagaaataaatgacaccaacta 42796009  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 19906481 - 19906409
Alignment:
Q  24 aatatcaacaacttctaccttatttaatgctactattcttaaattactccttcaattagtgtcgattttattttt 98  Q
    ||||||| ||| ||||||| ||||||| | || | |||||||||||| |||||||||||||| ||||||||||||    
T  19906481 aatatcagcaatttctaccatatttaaagttattcttcttaaattac-ccttcaattagtgt-gattttattttt 19906409  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 13471184 - 13471255
Alignment:
Q  146 aaaattacaattgtatattttataattttgagagaattaaatgacactaactattttattaaaagggtgtga 217  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||  | || ||| || |||||||||||    
T  13471184 aaaattacaattgtattttttataattttgagagaaataaatgacacctattaatttttttaaagggtgtga 13471255  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 13471376 - 13471451
Alignment:
Q  114 tcacggaacaagttcttatgcggggtaatttgaaaattacaattgtatattttataattttgagagaattaaatga 189  Q
    |||||||||||||||  |||  |||||||||  ||||||||||||||  |||||||| ||| |||||| |||||||    
T  13471376 tcacggaacaagttcccatgaagggtaatttagaaattacaattgtactttttataactttaagagaaataaatga 13471451  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 39263728 - 39263673
Alignment:
Q  136 gggtaatttgaaaattacaattgtatattttataattttgagagaattaaatgaca 191  Q
    |||||||||  |||||||||||| ||  |||||||||||||||||| |||||||||    
T  39263728 gggtaattttgaaattacaattgcattctttataattttgagagaaataaatgaca 39263673  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 31180714 - 31180769
Alignment:
Q  138 gtaatttgaaaattacaattgtatattt-tataattttgagagaattaaatgacac 192  Q
    ||||||||||||||| |||||||| ||| ||||| |||||||||| ||||||||||    
T  31180714 gtaatttgaaaattataattgtatttttatataactttgagagaaataaatgacac 31180769  T

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