View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_low_2 (Length: 733)
Name: NF11226_low_2
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 277 - 585
Target Start/End: Complemental strand, 6421621 - 6421327
Alignment:
| Q |
277 |
taaatcaaatgatcatatttggagcttaacgttggaaaaacatcaaatgtatgaatataaacatcgatataatgagaaaaatgaattattaacattgaaa |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6421621 |
taaatcaaatgatcatatttggagcttaacgttggaaaaacatcaagtgtatgaatataaacatcgatataatgagaaaaatcaattattaacattgaaa |
6421522 |
T |
|
| Q |
377 |
tcataactaactacacctaatctcaattagttacacattatcataataacttgcaataaagagatagaatgaagtgatgttgcatcaatcactcaatctt |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6421521 |
tcataactaactacacctaatctcaattagttacacattatcataataacttacaataaagagatagaatgaagcgatgttgcatcaatcactcaatctt |
6421422 |
T |
|
| Q |
477 |
caag-tttcaatgctccaccttaatgttgatctaaattgcgactgagtttctctttatatagtttcttgaaagtgaccgtttgcttggcgaaattgtgat |
575 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
6421421 |
caagttttcaatgctccaccttaatgttgatctaaattgcgactg---------------agtttcttaaaagtgaccgtttgcttggcgaaattgtgat |
6421337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 603 - 720
Target Start/End: Complemental strand, 6421332 - 6421215
Alignment:
| Q |
603 |
tcatccatgtgggtcactaaatctctagaattcgctagatgaatagaaaatcgtcatagcaaacggtgccatgtttcaagacttcaatctctgagacaat |
702 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6421332 |
tcatccatgtgggtcactaaatctctagaattcgctagatgaatagaaaatcgtcatagcaaacggtgccatgtttcaagacttcaatctctgagacaat |
6421233 |
T |
|
| Q |
703 |
ttactaagcttgtgcttc |
720 |
Q |
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|||||||||||||||||| |
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| T |
6421232 |
ttactaagcttgtgcttc |
6421215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 6422068 - 6422007
Alignment:
| Q |
224 |
gagaatgaggggaagaagaggatccaagtacaaagtttgtgtctagcactttataaatcaaa |
285 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6422068 |
gagaatgaggggaagaagaggatgcaagtacaaagtttgtgtctagcactttataaatcaaa |
6422007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 6422272 - 6422171
Alignment:
| Q |
16 |
caaatgttcctattctctgtcaaaataaaagtctatgaatttggatcatcacattcctttcattctctccttctccctctttcaccaagttatatctatc |
115 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |
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| T |
6422272 |
caaatgttcctattctctgtccagataaaagtctatgaatttggatcatctcatttctttcatt------------atctttcaccaagttatatctatc |
6422185 |
T |
|
| Q |
116 |
tctctctaaatttt |
129 |
Q |
| |
|
|||||||||||||| |
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| T |
6422184 |
tctctctaaatttt |
6422171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 29515501 - 29515451
Alignment:
| Q |
77 |
attctctccttctccctctttcaccaagttatatctatctctctctaaatt |
127 |
Q |
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||||| || ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
29515501 |
attctatcattctccctccttcaccaagttgtatctatctctctctaaatt |
29515451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 38894638 - 38894586
Alignment:
| Q |
77 |
attctctccttctccctctttcaccaagttatatctatctctctctaaatttt |
129 |
Q |
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|||||||||||||||||| |||||||||| |||| ||| ||||| |||||||| |
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| T |
38894638 |
attctctccttctccctcattcaccaagtaatatttatttctctttaaatttt |
38894586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 20370210 - 20370155
Alignment:
| Q |
74 |
ttcattctctccttctccctctttcaccaagttatatctatctctctctaaatttt |
129 |
Q |
| |
|
||||||||||| |||| |||| |||||||| || | |||||||||||||||||||| |
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|
| T |
20370210 |
ttcattctctcattcttcctccttcaccaaattgtgtctatctctctctaaatttt |
20370155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 22966745 - 22966691
Alignment:
| Q |
75 |
tcattctctccttctccctctttcaccaagttatatctatctctctctaaatttt |
129 |
Q |
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|
|||||||||| ||||| || ||||||||||| ||||||||||||| |||||||| |
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|
| T |
22966745 |
tcattctctcattctctcttattcaccaagttgtatctatctctctttaaatttt |
22966691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 39311312 - 39311363
Alignment:
| Q |
78 |
ttctctccttctccctctttcaccaagttatatctatctctctctaaatttt |
129 |
Q |
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||||||| ||||||||| ||||||| ||| ||| |||||||||||||||||| |
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| T |
39311312 |
ttctctcattctccctccttcaccatgttttatttatctctctctaaatttt |
39311363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 21883883 - 21883937
Alignment:
| Q |
75 |
tcattctctccttctccctctttcaccaagttatatctatctctctctaaatttt |
129 |
Q |
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|||||||||| ||||| || ||||||||||| ||||||||||||| |||||||| |
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|
| T |
21883883 |
tcattctctcattctctcttattcaccaagttgtatctatctctctttaaatttt |
21883937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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