View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_low_3 (Length: 646)
Name: NF11226_low_3
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 190 - 498
Target Start/End: Complemental strand, 6421621 - 6421327
Alignment:
| Q |
190 |
taaatcaaatgatcatatttggagcttaacgttggaaaaacatcaaatgtatgaatataaacatcgatataatgagaaaaatgaattattaacattgaaa |
289 |
Q |
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| T |
6421621 |
taaatcaaatgatcatatttggagcttaacgttggaaaaacatcaagtgtatgaatataaacatcgatataatgagaaaaatcaattattaacattgaaa |
6421522 |
T |
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| Q |
290 |
tcataactaactacacctaatctcaattagttacacattatcataataacttgcaataaagagatagaatgaagtgatgttgcatcaatcactcaatctt |
389 |
Q |
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| T |
6421521 |
tcataactaactacacctaatctcaattagttacacattatcataataacttacaataaagagatagaatgaagcgatgttgcatcaatcactcaatctt |
6421422 |
T |
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| Q |
390 |
caag-tttcaatgctccaccttaatgttgatctaaattgcgactgagtttctctttatatagtttcttgaaagtgaccgtttgcttggcgaaattgtgat |
488 |
Q |
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| T |
6421421 |
caagttttcaatgctccaccttaatgttgatctaaattgcgactg---------------agtttcttaaaagtgaccgtttgcttggcgaaattgtgat |
6421337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 516 - 633
Target Start/End: Complemental strand, 6421332 - 6421215
Alignment:
| Q |
516 |
tcatccatgtgggtcactaaatctctagaattcgctagatgaatagaaaatcgtcatagcaaacggtgccatgtttcaagacttcaatctctgagacaat |
615 |
Q |
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| T |
6421332 |
tcatccatgtgggtcactaaatctctagaattcgctagatgaatagaaaatcgtcatagcaaacggtgccatgtttcaagacttcaatctctgagacaat |
6421233 |
T |
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| Q |
616 |
ttactaagcttgtgcttc |
633 |
Q |
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| T |
6421232 |
ttactaagcttgtgcttc |
6421215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 6422068 - 6422007
Alignment:
| Q |
137 |
gagaatgaggggaagaagaggatccaagtacaaagtttgtgtctagcactttataaatcaaa |
198 |
Q |
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| T |
6422068 |
gagaatgaggggaagaagaggatgcaagtacaaagtttgtgtctagcactttataaatcaaa |
6422007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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