View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11226_low_5 (Length: 551)
Name: NF11226_low_5
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11226_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 275 - 536
Target Start/End: Original strand, 32773412 - 32773678
Alignment:
| Q |
275 |
cacaaaatgatgtactgcatgcaacatatttgata----attagatctttaatgaactgcaacggatttgaacgaactgccttcgatggaaaattagcag |
370 |
Q |
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| T |
32773412 |
cacaaaatgatgtactgcatgcaacatatttgatatataattagatctttaatgaactgcaacggatttgaacgaactgccttcgatggaaaattagcag |
32773511 |
T |
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| Q |
371 |
attttcaatagaagatgaaagaagttgacgataaggaggcagactcgggaaatgtgccaggat-aaaaaatattcattaaaacaattaaattgtagttta |
469 |
Q |
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| T |
32773512 |
attttcaatagaagatgaaagatgttgacgataaggaggcagactcgggaaatgtgccaggataaaaaaaaattcattaaaacaattaaattgtagttta |
32773611 |
T |
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| Q |
470 |
catgtttacccatcactttgaattactttgaaaaggaagtgttgggtttttggtccaaagtaaaaag |
536 |
Q |
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| T |
32773612 |
catgtttacccatcactttgaattactttgaaaaggaagtgttgggtttttggtccaaagtgaaaag |
32773678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 32773140 - 32773386
Alignment:
| Q |
11 |
cataggcaaccaaaaagaaagaacaaaatttgggaattttttaacaccttaattgccttatttgataataagaaattcgaagaacaaaagaaattgtacc |
110 |
Q |
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| T |
32773140 |
cataggcaaccaaaaagaaagaacaaaatttgggaattttttaacaacctaattgccttatttgataataagaaattcgaagaacaaaagaaattgtacc |
32773239 |
T |
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| Q |
111 |
cagatttattgttcgaatatgaatcttcgataattctagagttgtcttgacat---------ataggttttaagttcaaattttttagttcatgcttaac |
201 |
Q |
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| T |
32773240 |
cagatttattgttcgaatatgaatcttcgataattctagagttttctagacataataaagacataggttttaagttcaaattttttagttcatgcttaac |
32773339 |
T |
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| Q |
202 |
tacagttcatgtagtttacacccagggcccaccaactcaaatgatga |
248 |
Q |
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| T |
32773340 |
tacagttcatgtagtttacacccacggcccacccactcaaatgatga |
32773386 |
T |
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