View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11226_low_7 (Length: 484)

Name: NF11226_low_7
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11226_low_7
NF11226_low_7
[»] chr1 (11 HSPs)
chr1 (18-289)||(625098-625378)
chr1 (322-473)||(625411-625562)
chr1 (435-473)||(28467384-28467422)
chr1 (439-473)||(41516157-41516191)
chr1 (444-473)||(48830153-48830182)
chr1 (441-473)||(15360855-15360887)
chr1 (442-470)||(15565912-15565940)
chr1 (441-473)||(30815712-30815744)
chr1 (441-473)||(42351983-42352015)
chr1 (441-473)||(44936667-44936699)
chr1 (437-469)||(45205025-45205057)
[»] chr8 (7 HSPs)
chr8 (440-473)||(12224976-12225009)
chr8 (443-473)||(27728098-27728128)
chr8 (441-475)||(38561687-38561721)
chr8 (441-470)||(26820160-26820189)
chr8 (437-469)||(2605976-2606008)
chr8 (441-469)||(8799366-8799394)
chr8 (437-473)||(34563207-34563243)
[»] chr6 (5 HSPs)
chr6 (441-473)||(2027483-2027515)
chr6 (441-473)||(1402957-1402989)
chr6 (437-473)||(2117360-2117396)
chr6 (442-470)||(4420607-4420635)
chr6 (441-473)||(30784518-30784550)
[»] chr5 (8 HSPs)
chr5 (441-473)||(35135739-35135771)
chr5 (441-473)||(37063151-37063183)
chr5 (441-473)||(39750104-39750136)
chr5 (441-473)||(7096204-7096236)
chr5 (441-473)||(14295467-14295499)
chr5 (441-473)||(28586843-28586875)
chr5 (441-473)||(38047932-38047964)
chr5 (441-473)||(39823198-39823230)
[»] chr4 (10 HSPs)
chr4 (441-473)||(20936079-20936111)
chr4 (441-473)||(32724080-32724112)
chr4 (435-470)||(27623590-27623625)
chr4 (442-472)||(28581988-28582018)
chr4 (439-473)||(29194480-29194514)
chr4 (441-473)||(4071843-4071875)
chr4 (441-473)||(11917520-11917552)
chr4 (441-473)||(36734854-36734886)
chr4 (441-473)||(49085950-49085982)
chr4 (441-473)||(54325114-54325146)
[»] chr3 (10 HSPs)
chr3 (441-473)||(53457338-53457370)
chr3 (441-470)||(659903-659932)
chr3 (441-473)||(1395632-1395664)
chr3 (441-473)||(6241161-6241193)
chr3 (441-473)||(25195385-25195417)
chr3 (441-473)||(27792833-27792865)
chr3 (441-473)||(33434084-33434116)
chr3 (441-473)||(40122829-40122861)
chr3 (441-473)||(49586993-49587025)
chr3 (441-473)||(53736190-53736222)
[»] chr2 (7 HSPs)
chr2 (441-473)||(17952778-17952810)
chr2 (438-472)||(29429835-29429869)
chr2 (444-473)||(31740036-31740065)
chr2 (437-470)||(39557741-39557774)
chr2 (441-473)||(1939409-1939441)
chr2 (441-473)||(3458618-3458650)
chr2 (441-473)||(37292424-37292456)
[»] scaffold0590 (1 HSPs)
scaffold0590 (441-473)||(1151-1183)
[»] scaffold0275 (1 HSPs)
scaffold0275 (441-473)||(2792-2824)
[»] chr7 (4 HSPs)
chr7 (437-473)||(1373617-1373653)
chr7 (441-473)||(5006586-5006618)
chr7 (437-473)||(30160967-30161003)
chr7 (441-473)||(31002722-31002754)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 625098 - 625378
Alignment:
Q  18 agataattgacttcaaacataatcaacatataaaagtctaaaatatggacaggtagcaatagtgctgcaagtttattggccataaaatttcaatcttaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625098 agataattgacttcaaacataatcaacatataaaagtctaaaatatggacaggtagcaatagtgctgcaagtttattggccataaaatttcaatcttaaa 625197  T
Q  118 gtatagtaatgattttcttnnnnnnnnnn---------gtacatagtgatgattaaggtgacttcattattaagcataatgtaaagtttggtagtaggtg 208  Q
    |||||||||||||||||||                   |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  625198 gtatagtaatgattttcttaaaataaaaataaaaaaaagtacatagtgatgattaaggtgactttattattaaacataatgtaaagtttggtagtaggtg 625297  T
Q  209 ctaaatttttatgagccacaataaactagtacttcagatattacttgtgatcttaagcgataaacgacatttcaaccaccc 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625298 ctaaatttttatgagccacaataaactagtacttcagatattacttgtgatcttaagcgataaacgacatttcaaccaccc 625378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 322 - 473
Target Start/End: Original strand, 625411 - 625562
Alignment:
Q  322 gaggtttgtattattatagtacaagctaacaaagatatggttcaatatttgactaatgtgaagacttttcttagttaaggctattttgagatagtaaata 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625411 gaggtttgtattattatagtacaagctaacaaagatatggttcaatatttgactaatgtgaagacttttcttagttaaggctattttgagatagtaaata 625510  T
Q  422 gtttaagagcttatgtatgacaaaagataaaataaagtcaaactattttcat 473  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  625511 atttaagagcttatgtatgacaaaagataaaataaagtcaatctattttcat 625562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 28467422 - 28467384
Alignment:
Q  435 tgtatgacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  28467422 tgtataacaaaagataaaataaagtcaaattattttcat 28467384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 473
Target Start/End: Complemental strand, 41516191 - 41516157
Alignment:
Q  439 tgacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||| |||||||||||||||||||    
T  41516191 tgacaaaagataaaagaaagtcaaactattttcat 41516157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Complemental strand, 48830182 - 48830153
Alignment:
Q  444 aaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||||||||    
T  48830182 aaagataaaataaagtcaaactattttcat 48830153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 15360855 - 15360887
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  15360855 acaaaagataaaataaagtcaaactgttttcat 15360887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 470
Target Start/End: Complemental strand, 15565940 - 15565912
Alignment:
Q  442 caaaagataaaataaagtcaaactatttt 470  Q
    |||||||||||||||||||||||||||||    
T  15565940 caaaagataaaataaagtcaaactatttt 15565912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 30815744 - 30815712
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||| |||||||||||||    
T  30815744 acaaaagataaaataaagttaaactattttcat 30815712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 42352015 - 42351983
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||| |||||||||||||||||||||||||    
T  42352015 acaaaagttaaaataaagtcaaactattttcat 42351983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 44936699 - 44936667
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||| |||||||||||||||||||||    
T  44936699 acaaaagataagataaagtcaaactattttcat 44936667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 45205025 - 45205057
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattt 469  Q
    ||||| |||||||||||||||||||||||||||    
T  45205025 tatgataaaagataaaataaagtcaaactattt 45205057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 440 - 473
Target Start/End: Complemental strand, 12225009 - 12224976
Alignment:
Q  440 gacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||||||||||||    
T  12225009 gacaaaagataaaataaagtcaaactattttcat 12224976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 443 - 473
Target Start/End: Complemental strand, 27728128 - 27728098
Alignment:
Q  443 aaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||    
T  27728128 aaaagataaaataaagtcaaactattttcat 27728098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 38561687 - 38561721
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcatct 475  Q
    |||||||||||||||||||||||||||||| ||||    
T  38561687 acaaaagataaaataaagtcaaactatttttatct 38561721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Original strand, 26820160 - 26820189
Alignment:
Q  441 acaaaagataaaataaagtcaaactatttt 470  Q
    ||||||||||||||||||||||||||||||    
T  26820160 acaaaagataaaataaagtcaaactatttt 26820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Original strand, 2605976 - 2606008
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattt 469  Q
    |||||||||||||||||| ||||||||||||||    
T  2605976 tatgacaaaagataaaattaagtcaaactattt 2606008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 469
Target Start/End: Original strand, 8799366 - 8799394
Alignment:
Q  441 acaaaagataaaataaagtcaaactattt 469  Q
    |||||||||||||||||||||||||||||    
T  8799366 acaaaagataaaataaagtcaaactattt 8799394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 34563207 - 34563243
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  34563207 tatgacaaaggataaaataaagtcaaacaattttcat 34563243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 2027515 - 2027483
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  2027515 acaaaagataaaataaagtcaaactattttcat 2027483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 1402957 - 1402989
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||| |||||||||||||    
T  1402957 acaaaagataaaataaagttaaactattttcat 1402989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 2117360 - 2117396
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  2117360 tatgacaaaggataaaacaaagtcaaactattttcat 2117396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 470
Target Start/End: Original strand, 4420607 - 4420635
Alignment:
Q  442 caaaagataaaataaagtcaaactatttt 470  Q
    |||||||||||||||||||||||||||||    
T  4420607 caaaagataaaataaagtcaaactatttt 4420635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 30784518 - 30784550
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||| ||||||    
T  30784518 acaaaagataaaataaagtcaaactactttcat 30784550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 35135771 - 35135739
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  35135771 acaaaagataaaataaagtcaaactattttcat 35135739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 37063183 - 37063151
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  37063183 acaaaagataaaataaagtcaaactattttcat 37063151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 39750104 - 39750136
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  39750104 acaaaagataaaataaagtcaaactattttcat 39750136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 7096236 - 7096204
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||| ||||||||    
T  7096236 acaaaagataaaataaagtcaaaccattttcat 7096204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 14295467 - 14295499
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  14295467 acaaaagataaaataaagtcaaactgttttcat 14295499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 28586875 - 28586843
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  28586875 acaaaagataaaataaagtcaaactgttttcat 28586843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 38047964 - 38047932
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  38047964 acaaaagataaaataaagtcaaattattttcat 38047932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 39823230 - 39823198
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||| ||||||    
T  39823230 acaaaagataaaataaagtcaaactactttcat 39823198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 20936111 - 20936079
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  20936111 acaaaagataaaataaagtcaaactattttcat 20936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 32724080 - 32724112
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  32724080 acaaaagataaaataaagtcaaactattttcat 32724112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 27623590 - 27623625
Alignment:
Q  435 tgtatgacaaaagataaaataaagtcaaactatttt 470  Q
    ||||| ||||||||||||||||||||||||||||||    
T  27623590 tgtataacaaaagataaaataaagtcaaactatttt 27623625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 472
Target Start/End: Complemental strand, 28582018 - 28581988
Alignment:
Q  442 caaaagataaaataaagtcaaactattttca 472  Q
    |||||||||||||||||||||||||||||||    
T  28582018 caaaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 439 - 473
Target Start/End: Complemental strand, 29194514 - 29194480
Alignment:
Q  439 tgacaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||| |||||||||||||||    
T  29194514 tgacaaaagataaaataaaatcaaactattttcat 29194480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 4071843 - 4071875
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  4071843 acaaaagataaaataaagtcaaattattttcat 4071875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 11917520 - 11917552
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  11917520 acaaaagataaaataaagtcaaattattttcat 11917552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 36734854 - 36734886
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||| |||||||||||||||||||||||||    
T  36734854 acaaaaggtaaaataaagtcaaactattttcat 36734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 49085950 - 49085982
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||| ||||||||||||||||    
T  49085950 acaaaagataaaataatgtcaaactattttcat 49085982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 54325146 - 54325114
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  54325146 acaaaagataaaataaagtcaaactgttttcat 54325114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 53457338 - 53457370
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  53457338 acaaaagataaaataaagtcaaactattttcat 53457370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 470
Target Start/End: Complemental strand, 659932 - 659903
Alignment:
Q  441 acaaaagataaaataaagtcaaactatttt 470  Q
    ||||||||||||||||||||||||||||||    
T  659932 acaaaagataaaataaagtcaaactatttt 659903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 1395632 - 1395664
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  1395632 acaaaagataaaataaagtcaaattattttcat 1395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 6241193 - 6241161
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||| |||||||||||||||||||||||||    
T  6241193 acaaaagttaaaataaagtcaaactattttcat 6241161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 25195385 - 25195417
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  25195385 acaaaagataaaataaagtcaaattattttcat 25195417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 27792833 - 27792865
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||| ||||||||||||||||    
T  27792833 acaaaagataaaataaggtcaaactattttcat 27792865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 33434116 - 33434084
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||| ||||||    
T  33434116 acaaaagataaaataaagtcaaactactttcat 33434084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 40122861 - 40122829
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  40122861 acaaaagataaaataaagtcaaactgttttcat 40122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 49587025 - 49586993
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  49587025 acaaaagataaaataaagtcaaactgttttcat 49586993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 53736222 - 53736190
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||| ||||||||||||||||    
T  53736222 acaaaagataaaataatgtcaaactattttcat 53736190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 17952810 - 17952778
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||||||||    
T  17952810 acaaaagataaaataaagtcaaactattttcat 17952778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 472
Target Start/End: Complemental strand, 29429869 - 29429835
Alignment:
Q  438 atgacaaaagataaaataaagtcaaactattttca 472  Q
    |||||||||||||||||||||||||||| ||||||    
T  29429869 atgacaaaagataaaataaagtcaaactgttttca 29429835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 473
Target Start/End: Complemental strand, 31740065 - 31740036
Alignment:
Q  444 aaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||||||||    
T  31740065 aaagataaaataaagtcaaactattttcat 31740036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 39557774 - 39557741
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactatttt 470  Q
    ||||||||| ||||||||||||||||||||||||    
T  39557774 tatgacaaatgataaaataaagtcaaactatttt 39557741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 1939441 - 1939409
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||| |||||||||||||    
T  1939441 acaaaagataaaataaagtgaaactattttcat 1939409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 3458618 - 3458650
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  3458618 acaaaagataaaataaagtcaaacttttttcat 3458650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 37292456 - 37292424
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||| |||||||||||||    
T  37292456 acaaaagataaaataaagtaaaactattttcat 37292424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 1183 - 1151
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||| ||||    
T  1183 acaaaagataaaataaagtcaaactattctcat 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 2792 - 2824
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||||||||||||||| ||||    
T  2792 acaaaagataaaataaagtcaaactattctcat 2824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 1373653 - 1373617
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattttcat 473  Q
    |||||||||||||||| |||||||||||| |||||||    
T  1373653 tatgacaaaagataaattaaagtcaaacttttttcat 1373617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Complemental strand, 5006618 - 5006586
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||||| |||||||    
T  5006618 acaaaagataaaataaagtcaaactgttttcat 5006586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 30161003 - 30160967
Alignment:
Q  437 tatgacaaaagataaaataaagtcaaactattttcat 473  Q
    |||| |||||||||||||||||||||||| |||||||    
T  30161003 tatggcaaaagataaaataaagtcaaactgttttcat 30160967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 473
Target Start/End: Original strand, 31002722 - 31002754
Alignment:
Q  441 acaaaagataaaataaagtcaaactattttcat 473  Q
    ||||||||||||||||||||||| |||||||||    
T  31002722 acaaaagataaaataaagtcaaaatattttcat 31002754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University