View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11226_low_8 (Length: 404)

Name: NF11226_low_8
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11226_low_8
NF11226_low_8
[»] chr1 (5 HSPs)
chr1 (11-404)||(625594-625987)
chr1 (350-398)||(32515437-32515483)
chr1 (366-398)||(33108632-33108664)
chr1 (366-398)||(38266470-38266502)
chr1 (366-402)||(48748325-48748361)
[»] chr3 (3 HSPs)
chr3 (78-247)||(41671759-41671928)
chr3 (364-401)||(13371142-13371179)
chr3 (365-398)||(27792900-27792933)
[»] chr6 (4 HSPs)
chr6 (365-398)||(34404117-34404150)
chr6 (366-404)||(6536969-6537007)
chr6 (364-401)||(20512652-20512689)
chr6 (365-401)||(27998425-27998461)
[»] chr5 (5 HSPs)
chr5 (364-401)||(20028498-20028535)
chr5 (365-398)||(4273386-4273419)
chr5 (364-401)||(39607511-39607548)
chr5 (352-399)||(17369437-17369482)
chr5 (366-398)||(33533549-33533581)
[»] chr8 (4 HSPs)
chr8 (366-401)||(2091788-2091823)
chr8 (365-402)||(13410224-13410261)
chr8 (352-399)||(6950349-6950394)
chr8 (369-401)||(7039835-7039867)
[»] chr4 (3 HSPs)
chr4 (366-401)||(23819114-23819149)
chr4 (366-394)||(31038877-31038905)
chr4 (366-398)||(46110231-46110263)
[»] scaffold0089 (1 HSPs)
scaffold0089 (364-401)||(33635-33672)
[»] chr2 (2 HSPs)
chr2 (365-398)||(37034050-37034083)
chr2 (366-398)||(16867767-16867799)
[»] chr7 (2 HSPs)
chr7 (366-402)||(36484045-36484081)
chr7 (369-401)||(45859539-45859571)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 625987 - 625594
Alignment:
Q  11 agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625987 agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact 625888  T
Q  111 gcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625887 gcagcagcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa 625788  T
Q  211 cattcattcaatcacactatagaggatacctagtaagatctcatctatcttctatttagggtccgattagattcacttatttgagtttatctatgacata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625787 cattcattcaatcacactatagaggatacctagtaagatctcatctatcttctatttagggtccgattagattcacttatttgagtttatctatgacata 625688  T
Q  311 agcacttttaaaactacgtgttatagtgtattcaaaaaacgtatgacatgtcggtataagttgttttcaacttatttctataagctcttcagaa 404  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625687 agcacttttaaaactacgtgccatagtgtattcaaaaaacgtatgacatgtcggtataagttgttttcaacttatttctataagctcttcagaa 625594  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 32515437 - 32515483
Alignment:
Q  350 cgtatgacatgtcggtataagttgttttcaacttatttctataagctct 398  Q
    |||||||||||||   |||||||||||||||||||| ||||||||||||    
T  32515437 cgtatgacatgtca--ataagttgttttcaacttatatctataagctct 32515483  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 33108632 - 33108664
Alignment:
Q  366 ataagttgttttcaacttatttctataagctct 398  Q
    ||||||||||||||||||||||| |||||||||    
T  33108632 ataagttgttttcaacttatttccataagctct 33108664  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 38266470 - 38266502
Alignment:
Q  366 ataagttgttttcaacttatttctataagctct 398  Q
    |||| ||||||||||||||||||||||||||||    
T  38266470 ataatttgttttcaacttatttctataagctct 38266502  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 48748325 - 48748361
Alignment:
Q  366 ataagttgttttcaacttatttctataagctcttcag 402  Q
    |||||||||||||| |||||||| |||||||||||||    
T  48748325 ataagttgttttcagcttatttccataagctcttcag 48748361  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 247
Target Start/End: Original strand, 41671759 - 41671928
Alignment:
Q  78 agaaatcatgccattgcagttgcagaagccactgcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggtt 177  Q
    ||||||||||| |||||   ||| | ||| || ||||| ||||||  |||||| ||||  || |||||||||||||||||||||||||||||||| |||     
T  41671759 agaaatcatgcaattgcctatgctgcagcaacagcagcagcagctgaagctgcagtggctgcggctcaagcagctgctagagttgtgagattggcaggtc 41671858  T
Q  178 atggacgccataacaaggaagaaagagcagcaacattcattcaatcacactatagaggatacctagtaag 247  Q
    |||||||  |    ||||  |||| |||||||| | | ||||||||  ||||||||||||||||||||||    
T  41671859 atggacgtaactctaaggtcgaaaaagcagcaatactaattcaatcctactatagaggatacctagtaag 41671928  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 13371179 - 13371142
Alignment:
Q  364 gtataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  13371179 gtataagttgttttcagcttatttccataagctcttca 13371142  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 27792933 - 27792900
Alignment:
Q  365 tataagttgttttcaacttatttctataagctct 398  Q
    ||||||||||||||| ||||||||||||||||||    
T  27792933 tataagttgttttcagcttatttctataagctct 27792900  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 34404150 - 34404117
Alignment:
Q  365 tataagttgttttcaacttatttctataagctct 398  Q
    ||||||||||||||||||||||||||||||||||    
T  34404150 tataagttgttttcaacttatttctataagctct 34404117  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 404
Target Start/End: Complemental strand, 6537007 - 6536969
Alignment:
Q  366 ataagttgttttcaacttatttctataagctcttcagaa 404  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  6537007 ataagttgttttcagcttatttccataagctcttcagaa 6536969  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 20512652 - 20512689
Alignment:
Q  364 gtataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  20512652 gtataagttgttttcagcttatttccataagctcttca 20512689  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 27998425 - 27998461
Alignment:
Q  365 tataagttgttttcaacttatttctataagctcttca 401  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  27998425 tataagttgttttcagcttatttctataaactcttca 27998461  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 20028498 - 20028535
Alignment:
Q  364 gtataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||| |||||||||||||||||||||    
T  20028498 gtataagttgttttcagcttatttctataagctcttca 20028535  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 4273386 - 4273419
Alignment:
Q  365 tataagttgttttcaacttatttctataagctct 398  Q
    |||||||||||||||||||||| |||||||||||    
T  4273386 tataagttgttttcaacttattgctataagctct 4273419  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 39607548 - 39607511
Alignment:
Q  364 gtataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  39607548 gtataagttgttttcagcttatttcgataagctcttca 39607511  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 17369437 - 17369482
Alignment:
Q  352 tatgacatgtcggtataagttgttttcaacttatttctataagctctt 399  Q
    |||||||||||  |||||||||||||||  ||||||||||||||||||    
T  17369437 tatgacatgtc--tataagttgttttcagattatttctataagctctt 17369482  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Original strand, 33533549 - 33533581
Alignment:
Q  366 ataagttgttttcaacttatttctataagctct 398  Q
    ||||||||||||||||||||||| |||||||||    
T  33533549 ataagttgttttcaacttatttccataagctct 33533581  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 2091823 - 2091788
Alignment:
Q  366 ataagttgttttcaacttatttctataagctcttca 401  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2091823 ataagttgttttcaacttatttctatatgctcttca 2091788  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 13410224 - 13410261
Alignment:
Q  365 tataagttgttttcaacttatttctataagctcttcag 402  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  13410224 tataagttgtttttaacttatttctgtaagctcttcag 13410261  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 6950394 - 6950349
Alignment:
Q  352 tatgacatgtcggtataagttgttttcaacttatttctataagctctt 399  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||||    
T  6950394 tatgacatgtcg--ataagttgttttcagcttatttccataagctctt 6950349  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 7039867 - 7039835
Alignment:
Q  369 agttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||||||| ||||||||||||    
T  7039867 agttgttttcaacttatttccataagctcttca 7039835  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 23819149 - 23819114
Alignment:
Q  366 ataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||| |||||||||||||||||||||    
T  23819149 ataagttgttttcatcttatttctataagctcttca 23819114  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Original strand, 31038877 - 31038905
Alignment:
Q  366 ataagttgttttcaacttatttctataag 394  Q
    |||||||||||||||||||||||||||||    
T  31038877 ataagttgttttcaacttatttctataag 31038905  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 46110263 - 46110231
Alignment:
Q  366 ataagttgttttcaacttatttctataagctct 398  Q
    |||||||||||||| ||||||||||||||||||    
T  46110263 ataagttgttttcagcttatttctataagctct 46110231  T

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Target: scaffold0089 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 33635 - 33672
Alignment:
Q  364 gtataagttgttttcaacttatttctataagctcttca 401  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  33635 gtataagttgttttcagcttatttccataagctcttca 33672  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Complemental strand, 37034083 - 37034050
Alignment:
Q  365 tataagttgttttcaacttatttctataagctct 398  Q
    ||||| ||||||||||||||||||||||||||||    
T  37034083 tataaattgttttcaacttatttctataagctct 37034050  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 398
Target Start/End: Complemental strand, 16867799 - 16867767
Alignment:
Q  366 ataagttgttttcaacttatttctataagctct 398  Q
    ||||||||||||||||||||||| |||||||||    
T  16867799 ataagttgttttcaacttatttccataagctct 16867767  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 36484045 - 36484081
Alignment:
Q  366 ataagttgttttcaacttatttctataagctcttcag 402  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  36484045 ataaggtgttttcaacatatttctataagctcttcag 36484081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 45859539 - 45859571
Alignment:
Q  369 agttgttttcaacttatttctataagctcttca 401  Q
    ||||||||||| |||||||||||||||||||||    
T  45859539 agttgttttcagcttatttctataagctcttca 45859571  T

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