View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11226_low_9 (Length: 364)

Name: NF11226_low_9
Description: NF11226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11226_low_9
NF11226_low_9
[»] chr3 (4 HSPs)
chr3 (1-350)||(2517420-2517769)
chr3 (279-347)||(21868047-21868115)
chr3 (297-349)||(49070526-49070578)
chr3 (302-346)||(50329433-50329477)
[»] chr2 (2 HSPs)
chr2 (279-347)||(10916998-10917066)
chr2 (278-337)||(34363961-34364020)
[»] chr8 (1 HSPs)
chr8 (296-341)||(11442860-11442905)
[»] chr7 (2 HSPs)
chr7 (296-341)||(22768619-22768664)
chr7 (279-348)||(26854038-26854107)
[»] chr4 (1 HSPs)
chr4 (298-349)||(42060457-42060509)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 2517769 - 2517420
Alignment:
Q  1 ataagcttaatggacaacatcatgcataatagttgaggctaaatttgagtgaagttttagagtaatgtgccattttagtacaaacttcaacatgtttcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517769 ataagcttaatggacaacatcatgcataatagttgaggctaaatttgagtgaagttttagagtaatgtgccattttagtacaaacttcaacatgtttcac 2517670  T
Q  101 agtacatgtattactattatatatatgaacatccaagaaaactcagccataaaacaccttcctataatcaattgtgaattgagtaacagatgaattaagg 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517669 aatacatgtattactattatatatatgaacatccaagaaaactcagccataaaacaccttcctataatcaattgtgaattgagtaacagatgaattaagg 2517570  T
Q  201 cttaacaaaaggtaagtaaatagggacatatatttgaattaaaatgaagatattggagttggagatatgcatgctagttgttgtgataggtctaatgtga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517569 cttaacaaaaggtaagtaaatagggacatatatttgaattaaaatgaagatattggagttggagatatgcatgctagttgttgtgataggtctaatgtga 2517470  T
Q  301 gttaaagtcccacattgaatgaaagagttaaggttgagcaatatataagc 350  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2517469 gttaaagtcccacattgaatgaaagagttaaggttgagcaacatataagc 2517420  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 21868115 - 21868047
Alignment:
Q  279 tgttgtgataggtctaatgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaatatata 347  Q
    |||||||||  ||| |||||||||||||||||||||||| |||||| |||  ||||||||||| |||||    
T  21868115 tgttgtgatgtgtcaaatgtgagttaaagtcccacattggatgaaaaagtcgaggttgagcaacatata 21868047  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 49070578 - 49070526
Alignment:
Q  297 gtgagttaaagtcccacattgaatgaaagagttaaggttgagcaatatataag 349  Q
    ||||||||||||||||||| | ||| ||||||| ||||||| ||| |||||||    
T  49070578 gtgagttaaagtcccacataggatggaagagttgaggttgaacaacatataag 49070526  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 50329477 - 50329433
Alignment:
Q  302 ttaaagtcccacattgaatgaaagagttaaggttgagcaatatat 346  Q
    |||||||||||||||| ||| ||||||| ||||||||||| ||||    
T  50329477 ttaaagtcccacattggatggaagagttgaggttgagcaacatat 50329433  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 347
Target Start/End: Original strand, 10916998 - 10917066
Alignment:
Q  279 tgttgtgataggtctaatgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaatatata 347  Q
    |||| ||||| ||| ||||||||||||||  |||||||| ||| |||||||||| ||||| ||||||||    
T  10916998 tgttatgatatgtcaaatgtgagttaaagctccacattggatggaagagttaagattgaggaatatata 10917066  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 34364020 - 34363961
Alignment:
Q  278 ttgttgtgataggtctaatgtgagttaaagtcccacattgaatgaaagagttaaggttga 337  Q
    ||||||||||  ||| ||||||||||||||||| |||||  |||||||| ||||||||||    
T  34364020 ttgttgtgatgtgtcaaatgtgagttaaagtcctacattagatgaaagaattaaggttga 34363961  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 11442860 - 11442905
Alignment:
Q  296 tgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaa 341  Q
    |||||||||||||||||| ||| ||| ||||||| |||||||||||    
T  11442860 tgtgagttaaagtcccacgttggatggaagagttgaggttgagcaa 11442905  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 22768664 - 22768619
Alignment:
Q  296 tgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaa 341  Q
    |||||||||||||||||||||  ||| |||||||||| ||||||||    
T  22768664 tgtgagttaaagtcccacattagatggaagagttaagattgagcaa 22768619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 26854038 - 26854107
Alignment:
Q  279 tgttgtgataggtctaatgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaatatataa 348  Q
    |||||||||  ||| |||||| |||||||| ||||||| |||  ||||||||||||||| ||| ||||||    
T  26854038 tgttgtgatgtgtcaaatgtgggttaaagtgccacattcaatagaagagttaaggttgaacaacatataa 26854107  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 42060509 - 42060457
Alignment:
Q  298 tgagttaaagtcccacattgaatgaaagag-ttaaggttgagcaatatataag 349  Q
    ||||||||| | |||||||||||||| ||| || |||||||||||||||||||    
T  42060509 tgagttaaacttccacattgaatgaacgagttttaggttgagcaatatataag 42060457  T

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