View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_high_10 (Length: 323)
Name: NF11227_high_10
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 37489325 - 37489013
Alignment:
| Q |
1 |
atcagatatgactggacttgatataaagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaagatatgagattttccatt |
100 |
Q |
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| T |
37489325 |
atcagatatgactggacttgatataaagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaagatatgagattttccatt |
37489226 |
T |
|
| Q |
101 |
atggagggtgtaagtagcaccggcatagcaggacctctgtaagttaattctgcaggtggagtcgaatcgtcgagtcttgttttaatctccgaaagaagtt |
200 |
Q |
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| T |
37489225 |
atggagggtgtaagtagcaccggcatagcaggacctctgtaagttaattctgcaggtggagtagaatcgtcgagtcttgttttaatctccgaaagaagtt |
37489126 |
T |
|
| Q |
201 |
tacccttttgcttgaattaatgtgatggaaatgatattagctaggcttcggccatctcaaaagtccaatccagaacattacgcctatgttaatttttcga |
300 |
Q |
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| T |
37489125 |
tacccttttgcttgaattaatgtgatggaaatgatattagctaggcttcggccatctcaaaagtccaatcaagaacattacgcctatgttaattttctga |
37489026 |
T |
|
| Q |
301 |
accggcacctatg |
313 |
Q |
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||||||||||||| |
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| T |
37489025 |
accggcacctatg |
37489013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 4661626 - 4661684
Alignment:
| Q |
26 |
aagcagataaataattggttcatcaatcagaggaaaagacactggaaaccatctgaaga |
84 |
Q |
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||||| |||||||| |||||||| ||||| ||||| || |||||||||||||| ||||| |
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| T |
4661626 |
aagcaaataaataactggttcataaatcaaaggaagaggcactggaaaccatcagaaga |
4661684 |
T |
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