View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_high_4 (Length: 498)
Name: NF11227_high_4
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 41085201 - 41084930
Alignment:
| Q |
18 |
cttgggaagatttatactagttgtacaatttaaacaaattattcttagtagtacaagtttatttccacggtgaaaatggttgggacgtacatagcgacaa |
117 |
Q |
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| T |
41085201 |
cttgggaagatttatactagttgtacaatttaaacaaattattattagtagtacaagtttatttccacggtgaaaatggttgggacgtacatagcgacaa |
41085102 |
T |
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| Q |
118 |
cctcaagcttctcacaaaattggtgttaagtacgttccccc------tgtcatatttacacttcgtatcaaaagcaatcttggccattatgaattcatag |
211 |
Q |
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| T |
41085101 |
cctcaagcttctcacaaaattggtgttaagtacgttcccccaaaatttgtcatatttacacttcgtatcaaaagcaatcgtggccattatgaattcatag |
41085002 |
T |
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| Q |
212 |
acatccttttttcaaacacccaatatacaccccacgtgtcattatggctattttggtgatttcaccttaccc |
283 |
Q |
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| T |
41085001 |
acatccttttttcaaacccccaatatacaccccacgtgtcattagggctattttggtgatttcaccttaccc |
41084930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 41084889 - 41084835
Alignment:
| Q |
324 |
aacaccaccaccaccgtgtgtttaggttttcttatttccttgttgcagatttgcg |
378 |
Q |
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| T |
41084889 |
aacaccaccaccaccgtgtgtttaggttttcttatttcgttgttgcagatttgcg |
41084835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 443 - 491
Target Start/End: Complemental strand, 41084774 - 41084726
Alignment:
| Q |
443 |
caaagttggtcgcgatatagaggatttgataggcatgagcggatctctg |
491 |
Q |
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| T |
41084774 |
caaagttggtcgcgatatagaggatttgataggcatgagcggatatctg |
41084726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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