View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11227_high_5 (Length: 470)
Name: NF11227_high_5
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Complemental strand, 53970306 - 53969870
Alignment:
| Q |
15 |
caaaggatataaatcttgaactcgtgtttcacccgtgtattttctccatactggaccatgtttgagaaatctcactagattctaagatgcaatgttcacc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53970306 |
caaaggatataaatcttgaactcgtgtttcacccgtgtattttctccatactggaccatgtttgagaaatctcactagattctaagatgcaatgttcac- |
53970208 |
T |
|
| Q |
115 |
actagattttgctctctctccctcaactacttctccctgatttctatctattgtaagagctctgcctttagccccattgtcgaaaccaacaacatttctt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53970207 |
actagattttgctctctctccctcaactacttctccctgatttctatctattgtaagagctctgcctttagccccgttgtcgaaaccaacaacatttctt |
53970108 |
T |
|
| Q |
215 |
ccgggcattatagcttatcatatatctcatcacctatagctaaaaccattacctcttgcacacataaaacccctccctctggtgttttggagtttaggag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53970107 |
ccgggcattatagcttatcatatatctcatcacctatagctaaaaccattaccccttgcacacataaaacccctccctctggtgttttggagtttaggag |
53970008 |
T |
|
| Q |
315 |
attgaagctctaattggtagctgcattcctaccacgcagtcataacacctccacagcttaattcgacgtataatcttaatctaattctctaaccaagtca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53970007 |
attgaagctctaattggtagctgcattcctaccacgcagtcataacacctccacagcttaattcgacgtataatcttaatctaattctctaaccaagtca |
53969908 |
T |
|
| Q |
415 |
ataccttatctgaattttatatcagcattgttgggggg |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53969907 |
ataccttatctgaattttatatcagcattgttgggggg |
53969870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University