View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11227_high_8 (Length: 377)
Name: NF11227_high_8
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_high_8 |
 | |
|
| [»] scaffold0320 (1 HSPs) |
| | |
|
| [»] scaffold0442 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 24999489 - 24999853
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| || | |||| || |
|
|
| T |
24999489 |
atgatgaacacatcttacactttgacgatgaactctatatttaacaattttgatttctgtattgaagagtgctaggtttcttgaa---aatatggaaata |
24999585 |
T |
|
| Q |
104 |
--gtagtataagcaagcttgaaa------aagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacattgaaaa |
195 |
Q |
| |
|
| | || |||| | | |||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24999586 |
tggaaata-aagccatatggaaatatggaaataaggcattagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacattgaaaa |
24999684 |
T |
|
| Q |
196 |
tgcaaatcttcnnnnnnnnnnnnnnnnnnnnntgcaaatctttagagctttccctggtatcggaagtattagatacaaaaaggtaactttgaaaatgttt |
295 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24999685 |
tgcaaatcatcaaaaaaatagaggaaaaaaaatgcaaatctttagagctttccctggtatcggaagtattagatacaaaaaggtaactttgaaaatgttt |
24999784 |
T |
|
| Q |
296 |
ttcattcagatatatcctcaccatatcgttggtctctccttcctcttcacgtttttaaataattgatgt |
364 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24999785 |
ttcattcagatatatcgtcaccatatcgttggtctctccttcctcttcacgtttttaaataattgatgt |
24999853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 24997794 - 24997706
Alignment:
| Q |
228 |
tgcaaatctttagagctttccctggtatcggaa-gtattagatacaaaaa--ggtaactttgaaaatgtttttcattcagatatatcct |
313 |
Q |
| |
|
||||||||||||||| |||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24997794 |
tgcaaatctttagagttttcaatggtattggaaagtattagatacaaaaaaaggtaactttgaaaatgtttttcatttagatatatcct |
24997706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 24997861 - 24997820
Alignment:
| Q |
165 |
aaacaatatggaaataaagccacattgaaaatgcaaatcttc |
206 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24997861 |
aaacaatatggaaacaaagccacgttgaaaatgcaaatcttc |
24997820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 30894223 - 30894292
Alignment:
| Q |
51 |
ttttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagtagtagtataagcaagctt |
120 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||| ||||||||| ||||| ||||||| ||||||| |
|
|
| T |
30894223 |
tttttatttatgtattgatgaattgtaggtttcttgagtcaaagaggaaagtaagagtataatcaagctt |
30894292 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 2665099 - 2665160
Alignment:
| Q |
39 |
tatatttaacaattttgatttatgtattgaagaa-tgctaggtttcttgaatcaaagagggaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||| | ||||||||||||||| |||||| |
|
|
| T |
2665099 |
tatattaaacaattttgatttatgtatcgaagaactgc-atgtttcttgaatcaaaaagggaa |
2665160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 7054468 - 7054283
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7054468 |
atgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagta |
7054369 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
7054368 |
gtagtataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat |
7054283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 9991180 - 9991078
Alignment:
| Q |
85 |
tgaatcaaagagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagc |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
9991180 |
tgaatcaatgagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagc |
9991081 |
T |
|
| Q |
185 |
cac |
187 |
Q |
| |
|
||| |
|
|
| T |
9991080 |
cac |
9991078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 16613531 - 16613429
Alignment:
| Q |
85 |
tgaatcaaagagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagc |
184 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16613531 |
tgaatcaatgagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagc |
16613432 |
T |
|
| Q |
185 |
cac |
187 |
Q |
| |
|
||| |
|
|
| T |
16613431 |
cac |
16613429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 1702528 - 1702426
Alignment:
| Q |
85 |
tgaatcaaagagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagc |
184 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
1702528 |
tgaatcaatgggggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagc |
1702429 |
T |
|
| Q |
185 |
cac |
187 |
Q |
| |
|
||| |
|
|
| T |
1702428 |
cac |
1702426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 13668 - 13853
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13668 |
atgatgaacacatcttacactttgatggtgaactttatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagta |
13767 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||||||||||||||| || |||||||||||||| |||| |||||||||| |
|
|
| T |
13768 |
gtagtataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagtgatggtgcaaacaatatagaaacaaagccacat |
13853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 8212445 - 8212630
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8212445 |
atgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaataatgctaggttttttgaatcaaagagggaagta |
8212544 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| |||||||| ||||| |||| |||||||||| |
|
|
| T |
8212545 |
gtagtataagcaagcttgaaaaagagggcacaagaaatatcaaagtaccaagagatggtgcaaaaaatatagaaacaaagccacat |
8212630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 9290706 - 9290891
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9290706 |
atgatgaacacatattacactttgatggtgaactctatatttagcaattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagta |
9290805 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||| |||||| |||| |||||||||| |
|
|
| T |
9290806 |
gtagtataagcaagcttgaaaaagagggcacgagaaagatcaaagtaccaagagatggtgcaagcaatatagaaacaaagccacat |
9290891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 189
Target Start/End: Complemental strand, 12311 - 12126
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
12311 |
atgatgaacacatcttacactctgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttcaatcaaatagggaagta |
12212 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
12211 |
gtagtataagcaagcttaaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat |
12126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 51424900 - 51425083
Alignment:
| Q |
6 |
gatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagtagt |
105 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51424900 |
gatgaacgcatcttacactttgatggtgaactctatatttaacaagtttgattcatgaattgaagaatgctaggttttttgaatcaaagagggaagtagt |
51424999 |
T |
|
| Q |
106 |
agtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
189 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
51425000 |
agaataagcaagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat |
51425083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 38981012 - 38981189
Alignment:
| Q |
4 |
atgatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagta |
103 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
38981012 |
atgatgaacacatcttacactttgatggtgaactctatatttaacaattttgattcatgtattgaagaatgctaggttttttgaatgaaagagggaagtg |
38981111 |
T |
|
| Q |
104 |
gtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatggaaataaagcc |
185 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||| |||| |||||| |
|
|
| T |
38981112 |
gtagtat----aagcttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagcc |
38981189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 24867345 - 24867176
Alignment:
| Q |
6 |
gatgaacacatcttacactttgacggtgagctctatatttaacaattttgatttatgtattgaagaatgctaggtttcttgaatcaaagagggaagtagt |
105 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| || |||||||||| ||||| ||||||||||||||||| | ||||| |||||||||||||| ||||||| | |
|
|
| T |
24867345 |
gatgaacacgtcttacattttgatggtgaactttatatttaactatttttatttatgtattgaagaacgataggtctcttgaatcaaagaaggaagtaat |
24867246 |
T |
|
| Q |
106 |
agtataagcaa-gcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaacaatatg |
174 |
Q |
| |
|
||||||||||| |||||||||| |||||| | |||| |||||| || || ||||||||||||||||||| |
|
|
| T |
24867245 |
agtataagcaatacttgaaaaaggaggcaccaaatagttcaaagaacaaaaagaaggtgcaaacaatatg |
24867176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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