View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11227_low_1 (Length: 729)

Name: NF11227_low_1
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11227_low_1
NF11227_low_1
[»] chr2 (8 HSPs)
chr2 (429-717)||(13447972-13448260)
chr2 (71-370)||(13447615-13447913)
chr2 (436-717)||(13454468-13454731)
chr2 (539-717)||(13439919-13440097)
chr2 (431-539)||(13439829-13439937)
chr2 (286-369)||(13454315-13454399)
chr2 (199-262)||(13454185-13454249)
chr2 (24-54)||(13447568-13447598)
[»] chr5 (2 HSPs)
chr5 (540-717)||(28385054-28385231)
chr5 (548-715)||(12540413-12540580)
[»] chr4 (5 HSPs)
chr4 (541-710)||(48965050-48965219)
chr4 (540-714)||(48967178-48967352)
chr4 (540-704)||(48961011-48961175)
chr4 (552-711)||(48957876-48958035)
chr4 (598-685)||(48912659-48912746)
[»] chr8 (1 HSPs)
chr8 (539-709)||(12641771-12641941)
[»] chr7 (1 HSPs)
chr7 (551-717)||(3417809-3417975)
[»] chr6 (1 HSPs)
chr6 (574-713)||(12590455-12590594)
[»] scaffold0536 (1 HSPs)
scaffold0536 (658-710)||(6800-6852)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 429 - 717
Target Start/End: Original strand, 13447972 - 13448260
Alignment:
Q  429 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447972 cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctc 13448071  T
Q  529 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctc 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13448072 aatcttttaaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagcttgtatagctttttctc 13448171  T
Q  629 caaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 717  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448172 caaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 13448260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 71 - 370
Target Start/End: Original strand, 13447615 - 13447913
Alignment:
Q  71 gacaggatcccacaaaatctagagatttaaagtacagaaaccagctttacaggattcttccatttcattcgactgtaaacaacagcaatgtcagactgac 170  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13447615 gacaggatcccacaaaatctagagatttaaagtacaggaaccagctttacaggattcttccatttcattcgactgtaaacaacggcaatgtcagactgac 13447714  T
Q  171 agaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447715 agaagtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatc 13447814  T
Q  271 aaaacaattaagtttaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg 370  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447815 aaaacaattaag-gaaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg 13447913  T

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Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 436 - 717
Target Start/End: Original strand, 13454468 - 13454731
Alignment:
Q  436 acttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaatcttt 535  Q
    ||||| |||||||||||| || |||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||| | ||||||||| |||||||||      
T  13454468 acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatct-- 13454565  T
Q  536 taaggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactc 635  Q
                    ||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||| ||||||||||||||    
T  13454566 ----------------tttaagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagcttgtgtagccttttctccaaactc 13454649  T
Q  636 tcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 717  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  13454650 tcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatgctatctttgctc 13454731  T

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Target: chr2; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 539 - 717
Target Start/End: Original strand, 13439919 - 13440097
Alignment:
Q  539 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 638  Q
    |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |    
T  13439919 ggtctctcaatcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagcttgtgtagccttttctccaaactcttg 13440018  T
Q  639 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 717  Q
    |||| ||||||| ||||||| |||||||||||||   |||||||||||||| ||||||||||||||| |||| ||||||    
T  13440019 agcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgttatccctgctc 13440097  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 431 - 539
Target Start/End: Original strand, 13439829 - 13439937
Alignment:
Q  431 ttcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaattaatcatccagcttgaggtctctcaa 530  Q
    |||||||||| |||||||||| | || || ||||||||| | ||||||||||  ||||||||| || ||||||||||||||   ||||| ||||||||||    
T  13439829 ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa 13439928  T
Q  531 tcttttaag 539  Q
    |||||||||    
T  13439929 tcttttaag 13439937  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 369
Target Start/End: Original strand, 13454315 - 13454399
Alignment:
Q  286 aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgt 369  Q
    ||||||||| ||||||||| ||||||||||||  ||||||| || ||| |||||||||||||||||||||||| |||| ||||||    
T  13454315 aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgt 13454399  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 13454185 - 13454249
Alignment:
Q  199 ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa 262  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||| |||||    
T  13454185 ttgaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa 13454249  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 13447568 - 13447598
Alignment:
Q  24 aatgaaacaaattaggggctaatcttcggtc 54  Q
    |||||||||||||||||||||||||||||||    
T  13447568 aatgaaacaaattaggggctaatcttcggtc 13447598  T

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Target: chr5 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 540 - 717
Target Start/End: Original strand, 28385054 - 28385231
Alignment:
Q  540 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 639  Q
    ||||||| |||||||||||||||| || ||||| ||||||||||||||||| || || ||||||| || |||| || |||| || ||||| |||||||||    
T  28385054 gtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagccttctctcctaactctcga 28385153  T
Q  640 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 717  Q
    ||| || | || ||||||||||||||||| ||||||||||||||| |||| | ||||||||||||| |||||||||||    
T  28385154 gcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgttatctctgctc 28385231  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 548 - 715
Target Start/End: Original strand, 12540413 - 12540580
Alignment:
Q  548 atcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtag 647  Q
    ||||||||| |||||| |||||||  ||||||||||||| ||| || || |||||||||| |||| || |||| || ||||||| |||||| ||| ||||    
T  12540413 atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagccttctctccaatctctcgtgcacgtag 12540512  T
Q  648 cctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgc 715  Q
     || |||||||||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||    
T  12540513 tctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatgccatctctgc 12540580  T

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Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 541 - 710
Target Start/End: Original strand, 48965050 - 48965219
Alignment:
Q  541 tctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgag 640  Q
    |||||| ||||||| || || |||||||| || |||||||| |||| ||||||||| ||||||||||| ||| || |||| ||||||||||||||| |||    
T  48965050 tctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagccttttctccaaactcttgag 48965149  T
Q  641 catgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 710  Q
    || |    || || || |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48965150 cacgacttctaattttctcagcttcatcaccactgtccatcaatctcctcacagccttctctatgctatc 48965219  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 540 - 714
Target Start/End: Original strand, 48967178 - 48967352
Alignment:
Q  540 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 639  Q
    |||||||  ||||||||| || ||||||||||| |  ||||||||||||||| |||| ||||||||||  ||| || |||| ||||||||||| ||||||    
T  48967178 gtctctcattcttttaagatcatcaatcaaagcaagtaaattattataagacaagccaccttcttgaagtgctcgtgtagccttttctccaaagtctcga 48967277  T
Q  640 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctg 714  Q
    ||| || | ||||| || |||||||||||  ||  |||||||||||| |||| ||| ||||||||| ||||||||    
T  48967278 gcacgttgtctgatcttctcagcttcatcgtcattgtccatcaatcttcttatagctttctctatgttatctctg 48967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 540 - 704
Target Start/End: Original strand, 48961011 - 48961175
Alignment:
Q  540 gtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcga 639  Q
    ||||||| |||||||||| || ||||| ||||||||||||||||||| ||| ||||| ||| |||||| ||||  |||||| || || ||||||||||||    
T  48961011 gtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctcatatagccttatccccaaactctcga 48961110  T
Q  640 gcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctat 704  Q
    ||| |  | || |||| ||| |||||||||||||||||||| ||| | || || |||||||||||    
T  48961111 gcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 552 - 711
Target Start/End: Original strand, 48957876 - 48958035
Alignment:
Q  552 tttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctg 651  Q
    |||||| || |||||||||| ||||||||| |||| ||| || || |||||||||| |||| || |||| |||||||| |||||| ||||| |  |  ||    
T  48957876 tttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtagccttttctccgaactcttgagcacgctgtttg 48957975  T
Q  652 atattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatct 711  Q
    || |  |||||||||||||||||||||||||||||| | |||||||| ||||| ||||||    
T  48957976 atttcctcagcttcatcaccaccgtccatcaatctcttcacagccttttctatactatct 48958035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 598 - 685
Target Start/End: Complemental strand, 48912746 - 48912659
Alignment:
Q  598 ccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccaccgtccatcaatc 685  Q
    ||||||| ||| || ||| ||||||| || |||||||||||||||||| | ||||| || |||||||||||||||| |||||||||||    
T  48912746 ccttctttaattgcatgtttagctttctccccaaactctcgagcatgttgtctgattttctcagcttcatcaccactgtccatcaatc 48912659  T

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Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 539 - 709
Target Start/End: Complemental strand, 12641941 - 12641771
Alignment:
Q  539 ggtctctcgatcttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcg 638  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||| |||||| || ||||||| || ||| ||| |||| ||||  ||||||||| |    
T  12641941 ggtctctcgatcttttaagatcgttaatcaaagccaacaaattgttatgagacgacccgccttcttcaacagcatgtgtagcctttttcccaaactcttg 12641842  T
Q  639 agcatgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctat 709  Q
    |||| || | ||||| |  | ||||||||||||| |||||||||||||||| ||||| |||||||| ||||    
T  12641841 agcacgttgtctgatttccttagcttcatcaccatcgtccatcaatctcctcacagctttctctatactat 12641771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 551 - 717
Target Start/End: Complemental strand, 3417975 - 3417809
Alignment:
Q  551 ttttaagttcgtcaatcaaagccaacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcct 650  Q
    ||||||||||||| |||||||  |||||||||| ||  || || || ||||||||||||||| || |||| || ||||||| |||||||||| |||| ||    
T  3417975 ttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctcgtttagccttctctccaagctctcgagcacgtagtct 3417876  T
Q  651 gatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatctctgctc 717  Q
     |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||  ||||||||||    
T  3417875 cataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtcatctctgctc 3417809  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 713
Target Start/End: Complemental strand, 12590594 - 12590455
Alignment:
Q  574 aacaaattattataagacgagcccccttcttgaatagcttgtatagctttttctccaaactctcgagcatgtagcctgatattttcagcttcatcaccac 673  Q
    ||||||||||||| ||| ||||| |||| ||||| |||| || |||||||||| || |||||| ||  | || | ||||| |  |||||||||   ||||    
T  12590594 aacaaattattattagaggagccaccttgttgaacagctagtctagctttttcccctaactcttgactacgtcgtctgatttcctcagcttcaatgccac 12590495  T
Q  674 cgtccatcaatctccttacagccttctctatgctatctct 713  Q
    | ||||||||||| || ||||| |||| ||||||||||||    
T  12590494 catccatcaatcttctcacagcattctttatgctatctct 12590455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 658 - 710
Target Start/End: Complemental strand, 6852 - 6800
Alignment:
Q  658 tcagcttcatcaccaccgtccatcaatctccttacagccttctctatgctatc 710  Q
    |||||||| |||||||| |||||||||||||| ||||||||||| || |||||    
T  6852 tcagcttcgtcaccaccatccatcaatctcctcacagccttctcaatactatc 6800  T

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