View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_10 (Length: 335)
Name: NF11227_low_10
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_10 |
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| [»] scaffold0121 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 9756677 - 9756985
Alignment:
| Q |
19 |
taaaattgcaaagaagtaatctttcatttacgtataacacatgcaccaagcttagaggaaaatggatgtatttggttcaaattttaaatcaaatacatca |
118 |
Q |
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| T |
9756677 |
taaaattgcaaagaagtaatctttcatttacgtacaactcatggaccaagcttagaggaaaatggatgtatttggttcaaattttaaatcaaatacataa |
9756776 |
T |
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| Q |
119 |
annnnnnnagatctatttttatttataattaaggtcagagagtagcatattatatgagtgttctatatcaccaactattaatataataggtggattttat |
218 |
Q |
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| T |
9756777 |
atttttttagatctatttttatttataattaatgtcagagagtagcatattatatgagtgttctatatcaccaactattaatataataggtggattttat |
9756876 |
T |
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| Q |
219 |
tgttggcatgaaatcagacagtaaattcaatggatagagttccaacagtaaaccattcactgtgtttgattttaaatttctgactactaattattttgcc |
318 |
Q |
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| T |
9756877 |
tgttggcatgaaatcagacagtaaattcaatggatagagttccaacagtaaaccattcactgtgtttgattttaaatttctgactactaattattttgct |
9756976 |
T |
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| Q |
319 |
gcctatgct |
327 |
Q |
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| T |
9756977 |
gcctatgct |
9756985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 36827 - 36676
Alignment:
| Q |
150 |
aggtcagagagtagcatattatatgagtgttctatatcaccaactattaatataataggtggattttattgttggcatgaaatcagacagtaaattcaat |
249 |
Q |
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| T |
36827 |
aggtcagagagtagcatattatatgagtgttctatatcaccaactattaatgtaataggtggatttgattgttggcatgaagtcagaaagtaaatttaat |
36728 |
T |
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| Q |
250 |
ggatagagttccaacagtaaaccattcactgtgtttgattttaaatttctga |
301 |
Q |
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| T |
36727 |
ggatagagttccaacagtaaaccattcattatgttcgattttaaattactga |
36676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 36920 - 36878
Alignment:
| Q |
77 |
aaaatggatgtatttggttcaaattttaaatcaaatacatcaa |
119 |
Q |
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| T |
36920 |
aaaatggatttatttagttcaaattttaaatcaaatacatcaa |
36878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 36468 - 36435
Alignment:
| Q |
244 |
ttcaatggatagagttccaacagtaaaccattca |
277 |
Q |
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| T |
36468 |
ttcaatgaatagagttccaacagtaaaccattca |
36435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 211 - 321
Target Start/End: Complemental strand, 49049561 - 49049451
Alignment:
| Q |
211 |
gattttattgttggcatgaaatcagacagtaaattcaatggatagagttccaacagtaaaccattcactgtgtttgattttaaatttctgactactaatt |
310 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||| ||||||| |
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| T |
49049561 |
gatttgattgttggcatgaaatcagaaagtaaattcaatggatagagttccaacagtaaaccattcattttgtttgattttaaactactgaccactaatt |
49049462 |
T |
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| Q |
311 |
attttgccgcc |
321 |
Q |
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| T |
49049461 |
attttgccgcc |
49049451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 49059295 - 49059230
Alignment:
| Q |
212 |
attttattgttggcatgaaatcagacagtaaattcaatggatagagttccaacagtaaaccattca |
277 |
Q |
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| T |
49059295 |
attttattgttggcatggaattggtaagtaaattcaatggatagagttcaaatagtaaaccattca |
49059230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 80 - 324
Target Start/End: Complemental strand, 39706795 - 39706554
Alignment:
| Q |
80 |
atggatgtatttggttcaaattttaaatcaaatacatcaannnnnnnagatctatttttatttataattaaggtcagagagtagcatattatatgagtgt |
179 |
Q |
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| T |
39706795 |
atggatgtattttgttcaaattttagatcaaatacgtcaattttttt-gacctatttttgcttataagtaaggcaagaga-tagcatattattacagtgt |
39706698 |
T |
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| Q |
180 |
tctatatcaccaactattaatataataggtggattttattgttggcatgaaatcagacagtaaattcaatggatagagttccaacagtaaaccattcact |
279 |
Q |
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| T |
39706697 |
tctatatcagca-ctgttaatgtggtagatgaatttgattgtaggcctgaaatcagcatataaattcaatggatagagtgccatcagtaaagcattcatt |
39706599 |
T |
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| Q |
280 |
gtgtttgattttaaatttctgactactaattattttgccgcctat |
324 |
Q |
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| T |
39706598 |
gtgtttgattttaaattactgactactaattattttgccgcctat |
39706554 |
T |
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