View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_12 (Length: 311)
Name: NF11227_low_12
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 46005828 - 46005546
Alignment:
| Q |
19 |
agtatccaattcatcgttcattttagacccatttaaccccaaattaagagagcatcacttgttaaaacatgtaaaagccaattgtttcttttttaaaaat |
118 |
Q |
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| T |
46005828 |
agtatccaattcatcgttcattttagacccatttaaccccaaattaacagagcatcacttgttaaaacatgtaaaagccaattgtttcttttttaaaaat |
46005729 |
T |
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| Q |
119 |
aatgaaaacaatacacaacgttttatatatgatagtgtgccatgacccactggtnnnnnnngaaacaaacgaagacataataatcaatgtaaattcataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46005728 |
aatgaaaacaatacacaacgttttatatatgatagtgtgccatgacccactggtaaaaaaagaaacaaacgaagacataataatcaatgtaaattcataa |
46005629 |
T |
|
| Q |
219 |
tgttttctgctctagcatcagagcaaggatttgactggctcctaatttttgccagagcattgatatcagaaaattactctctg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46005628 |
tgttttctgctctagcatcagagcaaggatttgactggctcctaatttttgccagagcattgatatcagaaaattactctctg |
46005546 |
T |
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