View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_16 (Length: 245)
Name: NF11227_low_16
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 34881086 - 34881300
Alignment:
| Q |
20 |
aagtgcttcatgaaaattttctttcaattattagattttacagaaatgatagctgacaagattgtcacctcattatggccaatccacctggcttgagtat |
119 |
Q |
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| T |
34881086 |
aagtgcttcatgaaaattttctttcaattattagattttacagaaatgatagctgacaagattgtcacctcattatggccaatccacctggcttgagtat |
34881185 |
T |
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| Q |
120 |
cctactcatctccttgaaaatatcaagaggctttgttaggtagtcaacactgacctgcaagacatattgagttttcaacctttgaatgactggctttagt |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34881186 |
cctattcatctccttgaaaatatcaagaggctttgttaggtagtcaacactgacctgcaagacatattgagttttcaacctttgaatgactggcttcagt |
34881285 |
T |
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| Q |
220 |
at-cctattcatctc |
233 |
Q |
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| T |
34881286 |
atccctattcatctc |
34881300 |
T |
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