View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_18 (Length: 239)
Name: NF11227_low_18
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 40995247 - 40995037
Alignment:
| Q |
19 |
tgattcaaattccgataaaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaag |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40995247 |
tgattcaagttccgataaaatcaaacaagcgcagagaaaagttttcctcgactttatcacaaattggattgcgcagttcactagccatgacatcaacaag |
40995148 |
T |
|
| Q |
119 |
ttttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40995147 |
ttttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatt |
40995048 |
T |
|
| Q |
219 |
tctctgctcct |
229 |
Q |
| |
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|||||| |||| |
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| T |
40995047 |
tctctgatcct |
40995037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 40987433 - 40987229
Alignment:
| Q |
19 |
tgattcaaattccgataaaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaag |
118 |
Q |
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|||||||| ||| | | |||||||||||| |||||| |||||||| |||||||||||| |||||||||||| || |||||||||| | || |||||| |
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| T |
40987433 |
tgattcaacttcgggtgaaatcaaacaaggacagagagaagttttcatcgacttcatcaaaaattggattgcacaattcactagccgtcgaattaacaag |
40987334 |
T |
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| Q |
119 |
ttttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatt |
218 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||| ||| |||||||||||||| |||||| |
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| T |
40987333 |
ttttctctcactgtttcaaaccctcaaacttgtggggaaacaatcgaacgttgtgttgctttcgtgacacaacggggtgtgaaagatttaactcttgatt |
40987234 |
T |
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| Q |
219 |
tctct |
223 |
Q |
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||||| |
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| T |
40987233 |
tctct |
40987229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 31463355 - 31463162
Alignment:
| Q |
36 |
aaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaagttttctctcacgatttc |
135 |
Q |
| |
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||||||||||||| || ||| |||||||| || |||||||||||||||||||||| || || |||||| | ||| ||||| |||||||||| | |||| |
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| T |
31463355 |
aaatcaaacaagcacaaagagaagttttcatcaacttcatcacaaattggattgcacacttgtctagccgtcgcattaacaaattttctctcatggtttc |
31463256 |
T |
|
| Q |
136 |
aaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatttctctgctcct |
229 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||| || |||||||||||||| |||||||||||| |||| |
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| T |
31463255 |
aaaccctcaaatttgtggggaaacaattgaacattgtgttgctttcgcgatacaacgcggtgtgaaagatttaactcttgatttctctgatcct |
31463162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 31462359 - 31462519
Alignment:
| Q |
20 |
gattcaaattccgataaaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaagt |
119 |
Q |
| |
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||||||| ||| ||| ||||||||||||| || ||| |||||| | | |||||||||||||||||||||| || | |||||||| | ||| ||||| |
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| T |
31462359 |
gattcaacttcagatgaaatcaaacaagcacaaagagaagtttacaacaacttcatcacaaattggattgcacactacactagccgttgcattaacaaaa |
31462458 |
T |
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| Q |
120 |
tttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttt |
180 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||| ||| ||| ||||||||| |
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| T |
31462459 |
tttctctcacgattttgaaccctcaaacttgtggagaaacaatcgaatgttttgttgcttt |
31462519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 31477391 - 31477205
Alignment:
| Q |
36 |
aaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaagttttctctcacgatttc |
135 |
Q |
| |
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|||||||||| || || ||| |||||||| || | ||||||||||||||||| || || ||||||||| | | || ||||| ||||| |||| | |||| |
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| T |
31477391 |
aaatcaaacaggcacaaagagaagttttcatcaatttcatcacaaattggatcgcacacttcactagctgtcatattaacaaattttccctcatggtttc |
31477292 |
T |
|
| Q |
136 |
aaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatttctc |
222 |
Q |
| |
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||||||||||||||| |||||||||| ||| ||| ||||||||| |||| ||||| | |||||||||||||| |||||||||| |
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| T |
31477291 |
gaaccctcaaacttgttgggaaacaatcgaacgttatgttgctttcgcgatacaacgctgtgtgaaagatttaactcttgatttctc |
31477205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 31476661 - 31476850
Alignment:
| Q |
36 |
aaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaagttttctctcacgatttc |
135 |
Q |
| |
|
||||||||||||| || | | || ||||| | |||||||||||||||||||||| || |||||| ||| | |||| || || ||||||||||| ||| |
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| T |
31476661 |
aaatcaaacaagcacaaaaataaattttcaacaacttcatcacaaattggattgcacacttcactggccgtcacattaaaaaaatttctctcacggtttt |
31476760 |
T |
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| Q |
136 |
aaaccctcaaacttgtggggaaac-aattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaacatttgatttctctg |
224 |
Q |
| |
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||| |||||||||| |||||||| ||| ||| ||| ||||||||| | |||||||| || || |||||| ||| ||||||||||||| |
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| T |
31476761 |
gaacactcaaacttgcggggaaacaaatcgaatgttttgttgctttcgtgacacaacgaggtatggaagattaaacttttgatttctctg |
31476850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 21179558 - 21179747
Alignment:
| Q |
20 |
gattcaaattccgataaaatcaaacaagcgcagagaaaagttttcgtcgacttcatcacaaattggattgcgcagttcactagccatgacatcaacaagt |
119 |
Q |
| |
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||||||| ||| ||| ||| |||||||| || |||||||||||| || |||| || || | |||||| || || || |||||| | ||| |||| || |
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| T |
21179558 |
gattcaacttctgatgaaaacaaacaagaacaaagaaaagttttcatcaactttattacgagttggatcgcacactttcctagccgcgccattaacaggt |
21179657 |
T |
|
| Q |
120 |
tttctctcacgatttcaaaccctcaaacttgtggggaaacaattgaaggttgtgttgcttttgcgacacaacagggcgtgaaagatttaa |
209 |
Q |
| |
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||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||| |||||||| |||| |
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| T |
21179658 |
tttctctcacggtttcgaatcctcaaacttgtggggaaacaattgagcgttgtgttgctttcacgatacaacggggagtgaaagagttaa |
21179747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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