View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_21 (Length: 220)
Name: NF11227_low_21
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37489616 - 37489391
Alignment:
| Q |
1 |
agtacatgtaattttttatataagaaagcgtactagtatat-------catatattttattgtgcaattaatgctaaccaaaacaatacatatattttgt |
93 |
Q |
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| T |
37489616 |
agtacatgtaattttt-atataagaaagtgtactagtatatagtatatcatatattttattgtgcaattaatgttaaccaaaacaatacatatattttgt |
37489518 |
T |
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| Q |
94 |
ccgacttcaaatcttgactaacaattcttgatcaaattttacttatcaaaaggttgacttgaattccaagtcacatgataacaacttcaactgcattgtg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
37489517 |
ccgacttcaaatcttgactaacaattcttgatcaaattttacttatcaaaaggttgacttgaactccaagtcacatgataacaacttcaactccattgtg |
37489418 |
T |
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| Q |
194 |
tcaaacttctttaatatattgacattc |
220 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37489417 |
tcaaacttctttaatatattgacattc |
37489391 |
T |
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