View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11227_low_7 (Length: 427)
Name: NF11227_low_7
Description: NF11227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11227_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 69 - 411
Target Start/End: Original strand, 25246939 - 25247280
Alignment:
| Q |
69 |
gacattatttaatatgaaaatgaaagaaaatgacactgaactcttcctcatacactcatttgatatccaaattgaaacaccataattttttattaacctt |
168 |
Q |
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| T |
25246939 |
gacattatttaatatgaaaatgaaagaaaatgacactgaactcttcctcatacactcatttgatatccaaattgaaacaccataattttttattaacctt |
25247038 |
T |
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| Q |
169 |
gcggttgaattatattggcatatagagtatgttattacaagtacaacgtgtaattgatctatatactcagaatctttcatatgtctcatattttgtaaca |
268 |
Q |
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| T |
25247039 |
gcggttgaattatattggcatatagagtatgttattacaagtacaacgtgtaattaatctatatactcggaatctttcatatgtctcatattttgtaaca |
25247138 |
T |
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| Q |
269 |
ttaaaatacataagataagatacacataaagaactatggaagataaatatacgcaggtat-aaatacaatacaaagaaataaatacatacatacgcaaat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
25247139 |
ttaaaatacataagataagatacacataaagaactatggaagataaatatacgcaggtataaaatacaatacaaagaaataa----atacatacgcaaat |
25247234 |
T |
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| Q |
368 |
taacgta--ataatttttactcaaacgtttacggagcaacgttgat |
411 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
25247235 |
taacgtaatataatttttactcaaacgttaacggagcaacgttgat |
25247280 |
T |
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